View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19400_high_22 (Length: 253)
Name: NF19400_high_22
Description: NF19400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19400_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 1212497 - 1212720
Alignment:
| Q |
1 |
catgccaaacatgcttagcaaaaacatctaaatgcttgtggtaccaaacaaagatagaaagtggtactaaacaaagatagaaagtggtaccnnnnnnnca |
100 |
Q |
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| T |
1212497 |
catgccaaacatgcttagcaaaaatatctaaatgcttgtggtaccaaacaaagatagaaagtggtactaaacaaagatagaaagtggtaccaaaaaaaca |
1212596 |
T |
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| Q |
101 |
tatatacctctcatgtggctagtagtgtattatgtggctagtaggctcccacaacgtatatga-------ttattttgaaggaaacgtatatgatatata |
193 |
Q |
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| T |
1212597 |
taaatacctctcatgtgg-------------------ctagtaggctcccacaacgtatatgatatttttttattttgaaggaaacgtatatgatatata |
1212677 |
T |
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| Q |
194 |
tacctctcctatgcaattatatcaaaataaataaagacctctc |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1212678 |
tacctctcctatgcaattatatcaaaataaataaagacctctc |
1212720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 1234082 - 1234141
Alignment:
| Q |
7 |
aaacatgcttagcaaaaacatctaaatgcttgtggtaccaaacaaagatagaaagtggtac |
67 |
Q |
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| T |
1234082 |
aaacatgcttagcaaaa-catataaatacttgtggtaccaaacaaagatagaaagtggtac |
1234141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 1234232 - 1234282
Alignment:
| Q |
99 |
catatatacctctcatgtggctagtagtgtattatgtggctagtaggctcc |
149 |
Q |
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| T |
1234232 |
catatatacctctcctgtggccagtagtgtattacgtggctagtaagctcc |
1234282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 61 - 236
Target Start/End: Original strand, 11202367 - 11202553
Alignment:
| Q |
61 |
gtggtactaaacaaagatagaaagtggtaccnnnnnnncatatatacctctcatgtggctagtagtgtattatgtggctagtaggctcccacaacgtata |
160 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11202367 |
gtggtactaaacaaagatagaaagtggtaccaaaaaaacatatatacctctcatgtggctagtagtgtattatgtggctagtaggctcccacaacgtata |
11202466 |
T |
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| Q |
161 |
tga---------ttattttgaaggaaacgtatatg--atatatatacctctcctatgcaattatatcaaaataaataaagacctctc |
236 |
Q |
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| T |
11202467 |
tgatatatattttttttttgaaggaaacgtatatgatatatatatacctctcctatacaattatatcaaaataaataaatacctctc |
11202553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 11202280 - 11202346
Alignment:
| Q |
1 |
catgccaaacatgcttagcaaaaacatctaaatgcttgtggtaccaaacaaagatagaaagtggtac |
67 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11202280 |
catgccaaacatgcttagcaaaaacatttaaatgcttgtggtaccaaacaaagatagaaagtggtac |
11202346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 11202349 - 11202396
Alignment:
| Q |
20 |
aaaaacatctaaatgcttgtggtaccaaacaaagatagaaagtggtac |
67 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
11202349 |
aaaaacatataaatgcttgtggtactaaacaaagatagaaagtggtac |
11202396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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