View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19400_high_23 (Length: 251)
Name: NF19400_high_23
Description: NF19400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19400_high_23 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 42918037 - 42917797
Alignment:
| Q |
11 |
agcacagacaccaagtaggttcatttatcaaactaagtgtgcttgtttaagtacgtctcagtttcttatggcagaatacatcaaacaacgggcattgcat |
110 |
Q |
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| T |
42918037 |
agcaaagacaccaagtaggttcatttatcaaactaagtgtgcttgtttaagtacgtctcagtttcttatggcagaatacatcaaacaacgggcattgcat |
42917938 |
T |
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| Q |
111 |
cacatgaaaaatactcaaataaaactaagggagtaaatctgagaaaactagtttgataaaagaatatatttctttggagtaggaagcattacccaaggca |
210 |
Q |
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| T |
42917937 |
cacatgacaaatactcaaataaaactaagggagtaaatctgagaaaactagtttgataaaagaatatatttctttggagtaggaagcattacccaaggca |
42917838 |
T |
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| Q |
211 |
atgcaccgatatgatcttcatgaccgtgtgttataactact |
251 |
Q |
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| T |
42917837 |
atgcaccgatatgatcttcatgaccgtgtgttataactact |
42917797 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 33965175 - 33965231
Alignment:
| Q |
191 |
aggaagcattacccaaggcaatgcaccgatatgatcttcatgaccgtgtgttataac |
247 |
Q |
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| T |
33965175 |
aggaagcattacccagggcaacgcaccaatatgatcttcatgaccatgtgttataac |
33965231 |
T |
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