View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19400_high_6 (Length: 431)
Name: NF19400_high_6
Description: NF19400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19400_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 12 - 416
Target Start/End: Original strand, 19173408 - 19173810
Alignment:
| Q |
12 |
tcatcagcagaagaactccctaaaggttaaagaagcccagcttgacctccttcccgaagagaggcagactgaatcctatttcggctataacggtctgcat |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
19173408 |
tcatcagcagaagaactccctaaaggttaaagaagcccagcttgacctccttcccgaagagaggcagactgaatcctatttcggctataacggtctgtat |
19173507 |
T |
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| Q |
112 |
tactatgttttcatacgtaggaatacctccgttagccggcttttgtagaaaattctatttgttcttcgccactttgtgttgtggggcttacttcctatct |
211 |
Q |
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| T |
19173508 |
tactatgttctcatacgtaggaatacctccgttagccggcttttgtagtaaattctatttgttcttcgccact--gtgttgtggggcttacttcctatct |
19173605 |
T |
|
| Q |
212 |
ccaccatgcgaaactttcaaacgagtgatagtttcaacattaactttcaaaattcctaggcccaccatttgattattcatatcggctgccttgcttgaga |
311 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19173606 |
ccactgtgtaaaactttcaaacgagtgatagtttcaacattaactttcaaaattcctaggcccaccatttgattattcatatcggctgccttgcttgaga |
19173705 |
T |
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| Q |
312 |
ggaagactaaatactcaagttttgttgaaacgagatgcacacataaataagctttatgatggtccttccttggacttgcctatcaacaactcaagtggtg |
411 |
Q |
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| T |
19173706 |
ggaagactaaatgctcaagttttgttgaaacgagatgcacacataaataagctttatgatggtccttccttggacttgcctatcaacaactcaagtggtg |
19173805 |
T |
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| Q |
412 |
aaatt |
416 |
Q |
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| T |
19173806 |
aaatt |
19173810 |
T |
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Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 128 - 208
Target Start/End: Complemental strand, 25565083 - 25565003
Alignment:
| Q |
128 |
gtaggaatacctccgttagccggcttttgtagaaaattctatttgttcttcgccactttgtgttgtggggcttacttccta |
208 |
Q |
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| T |
25565083 |
gtaggaatacccccgttagccggcttttatagcaaattctatttgttcttcgccgctttgggttgtggggcttacttccta |
25565003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 46435501 - 46435461
Alignment:
| Q |
147 |
ccggcttttgtagaaaattctatttgttcttcgccactttg |
187 |
Q |
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| T |
46435501 |
ccggcttttgtagcaaattctatttgttctttgccgctttg |
46435461 |
T |
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