View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19400_low_1 (Length: 621)

Name: NF19400_low_1
Description: NF19400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19400_low_1
NF19400_low_1
[»] chr4 (39 HSPs)
chr4 (5-343)||(46168137-46168474)
chr4 (202-339)||(19080388-19080525)
chr4 (256-344)||(24374787-24374875)
chr4 (288-344)||(47688478-47688534)
chr4 (300-346)||(12368666-12368712)
chr4 (288-346)||(26147031-26147089)
chr4 (280-346)||(31329708-31329774)
chr4 (294-348)||(52871292-52871346)
chr4 (286-343)||(1866342-1866399)
chr4 (295-344)||(2444370-2444419)
chr4 (295-344)||(53772805-53772854)
chr4 (294-346)||(24551928-24551980)
chr4 (294-346)||(53773591-53773643)
chr4 (283-346)||(20774174-20774237)
chr4 (256-346)||(142491-142581)
chr4 (294-344)||(42882686-42882736)
chr4 (288-346)||(47687905-47687963)
chr4 (286-344)||(47785796-47785854)
chr4 (285-346)||(2446157-2446218)
chr4 (287-344)||(9365167-9365224)
chr4 (294-346)||(8248525-8248577)
chr4 (294-346)||(8266190-8266242)
chr4 (288-344)||(30573708-30573764)
chr4 (295-338)||(50184432-50184475)
chr4 (288-339)||(53147874-53147925)
chr4 (288-339)||(53732438-53732489)
chr4 (294-340)||(599306-599352)
chr4 (269-343)||(11939422-11939495)
chr4 (288-338)||(16903642-16903692)
chr4 (294-336)||(55976172-55976214)
chr4 (279-344)||(1465318-1465383)
chr4 (294-339)||(3654520-3654565)
chr4 (263-323)||(5046003-5046062)
chr4 (295-339)||(5590097-5590140)
chr4 (294-346)||(7841540-7841592)
chr4 (298-346)||(16903677-16903725)
chr4 (295-339)||(19550289-19550333)
chr4 (288-340)||(26159620-26159672)
chr4 (295-339)||(48128230-48128273)
[»] chr3 (32 HSPs)
chr3 (357-603)||(36233344-36233590)
chr3 (263-344)||(46150704-46150784)
chr3 (220-344)||(11349367-11349491)
chr3 (278-344)||(55373695-55373761)
chr3 (263-345)||(45081378-45081459)
chr3 (286-339)||(37520558-37520611)
chr3 (288-344)||(41458031-41458087)
chr3 (294-346)||(48648199-48648251)
chr3 (284-343)||(264465-264524)
chr3 (261-348)||(13701525-13701612)
chr3 (263-346)||(27082772-27082855)
chr3 (284-346)||(13477053-13477115)
chr3 (294-340)||(17603170-17603216)
chr3 (286-340)||(31974653-31974707)
chr3 (294-339)||(21727534-21727579)
chr3 (293-346)||(54458669-54458722)
chr3 (294-338)||(31115604-31115648)
chr3 (294-337)||(265103-265146)
chr3 (256-343)||(8949934-8950021)
chr3 (294-344)||(14871151-14871201)
chr3 (293-346)||(20212976-20213029)
chr3 (285-346)||(37988214-37988275)
chr3 (294-343)||(51469284-51469333)
chr3 (287-336)||(52281772-52281821)
chr3 (288-336)||(981673-981721)
chr3 (294-346)||(17603966-17604018)
chr3 (288-344)||(20213530-20213586)
chr3 (286-346)||(23706800-23706859)
chr3 (286-346)||(23725256-23725315)
chr3 (286-346)||(23743712-23743771)
chr3 (295-343)||(40872814-40872862)
chr3 (288-332)||(48413329-48413373)
[»] chr2 (33 HSPs)
chr2 (5-346)||(12725330-12725671)
chr2 (214-339)||(24933839-24933964)
chr2 (202-332)||(11007241-11007371)
chr2 (243-339)||(29719449-29719545)
chr2 (286-346)||(1297119-1297179)
chr2 (286-346)||(9275582-9275642)
chr2 (283-344)||(11750255-11750316)
chr2 (293-346)||(23857027-23857080)
chr2 (286-346)||(9276326-9276386)
chr2 (256-323)||(18820451-18820518)
chr2 (265-344)||(36237629-36237707)
chr2 (286-344)||(1296377-1296435)
chr2 (286-340)||(15774204-15774258)
chr2 (288-346)||(18174668-18174726)
chr2 (280-346)||(29559410-29559476)
chr2 (279-339)||(8542537-8542597)
chr2 (294-346)||(11751073-11751125)
chr2 (288-344)||(18174097-18174153)
chr2 (288-344)||(22560566-22560622)
chr2 (288-344)||(42182613-42182669)
chr2 (280-339)||(9540334-9540393)
chr2 (285-340)||(22301865-22301920)
chr2 (295-346)||(27177908-27177959)
chr2 (280-339)||(34812846-34812905)
chr2 (294-340)||(27178649-27178695)
chr2 (294-340)||(29513151-29513197)
chr2 (281-346)||(6584218-6584283)
chr2 (282-323)||(8713482-8713523)
chr2 (294-339)||(15902886-15902931)
chr2 (283-323)||(8669189-8669229)
chr2 (288-344)||(12724739-12724795)
chr2 (288-344)||(23856633-23856689)
chr2 (294-346)||(29512367-29512419)
[»] chr8 (26 HSPs)
chr8 (437-603)||(22631625-22631791)
chr8 (402-603)||(28323487-28323680)
chr8 (256-346)||(14825639-14825729)
chr8 (286-346)||(8996970-8997030)
chr8 (286-346)||(38576298-38576358)
chr8 (281-346)||(41974636-41974701)
chr8 (294-344)||(22320372-22320422)
chr8 (278-344)||(32979812-32979878)
chr8 (294-346)||(3165126-3165178)
chr8 (294-346)||(11686222-11686274)
chr8 (288-344)||(31602014-31602070)
chr8 (284-347)||(3043237-3043300)
chr8 (293-332)||(14754052-14754091)
chr8 (295-345)||(3043970-3044020)
chr8 (265-339)||(17725630-17725703)
chr8 (295-344)||(8373698-8373747)
chr8 (293-346)||(9197091-9197144)
chr8 (288-349)||(11686962-11687023)
chr8 (485-518)||(22631587-22631620)
chr8 (294-347)||(26652288-26652341)
chr8 (285-346)||(27441462-27441523)
chr8 (294-339)||(32414528-32414573)
chr8 (286-343)||(37025005-37025061)
chr8 (295-339)||(8372916-8372960)
chr8 (288-344)||(9197818-9197874)
chr8 (296-344)||(37732824-37732872)
[»] chr5 (33 HSPs)
chr5 (202-339)||(6476703-6476840)
chr5 (202-338)||(10554550-10554686)
chr5 (293-341)||(38057598-38057646)
chr5 (288-346)||(235587-235645)
chr5 (256-338)||(25858213-25858295)
chr5 (278-323)||(27363762-27363807)
chr5 (280-344)||(4084877-4084941)
chr5 (294-346)||(7632090-7632142)
chr5 (294-346)||(19128765-19128817)
chr5 (295-346)||(237826-237877)
chr5 (295-346)||(19359699-19359750)
chr5 (289-344)||(29046026-29046081)
chr5 (288-346)||(236927-236985)
chr5 (288-346)||(17071219-17071277)
chr5 (285-339)||(27364482-27364536)
chr5 (288-346)||(28705877-28705935)
chr5 (295-344)||(234698-234747)
chr5 (294-346)||(1281831-1281883)
chr5 (288-344)||(17071792-17071848)
chr5 (280-344)||(29087922-29087986)
chr5 (285-340)||(1554078-1554133)
chr5 (295-346)||(19360481-19360532)
chr5 (294-337)||(22798905-22798948)
chr5 (287-346)||(28705160-28705219)
chr5 (288-343)||(34600259-34600314)
chr5 (295-346)||(38056789-38056840)
chr5 (284-322)||(33470400-33470438)
chr5 (298-339)||(1283533-1283574)
chr5 (298-339)||(10554524-10554565)
chr5 (295-344)||(43510229-43510278)
chr5 (294-338)||(1283504-1283548)
chr5 (295-339)||(14478923-14478967)
chr5 (288-344)||(34600829-34600885)
[»] chr7 (41 HSPs)
chr7 (214-317)||(18977033-18977136)
chr7 (278-339)||(7668484-7668545)
chr7 (253-346)||(37950432-37950524)
chr7 (286-346)||(25343298-25343358)
chr7 (253-344)||(30660590-30660680)
chr7 (286-344)||(25342494-25342552)
chr7 (286-346)||(46428182-46428242)
chr7 (294-349)||(25599014-25599069)
chr7 (240-307)||(42420392-42420459)
chr7 (288-346)||(3772525-3772583)
chr7 (288-346)||(27948441-27948499)
chr7 (257-339)||(30661424-30661505)
chr7 (257-339)||(37949607-37949688)
chr7 (288-340)||(3029197-3029249)
chr7 (294-346)||(14305085-14305137)
chr7 (286-346)||(16664122-16664182)
chr7 (286-346)||(17638482-17638542)
chr7 (280-340)||(24389607-24389667)
chr7 (288-344)||(26636100-26636156)
chr7 (285-340)||(14686132-14686187)
chr7 (280-343)||(24719333-24719396)
chr7 (288-339)||(26636859-26636910)
chr7 (295-346)||(37395505-37395556)
chr7 (295-346)||(45099899-45099950)
chr7 (285-347)||(1417602-1417664)
chr7 (294-339)||(13785598-13785643)
chr7 (283-344)||(40273557-40273618)
chr7 (289-346)||(45161964-45162021)
chr7 (294-338)||(24453731-24453775)
chr7 (294-346)||(47719709-47719761)
chr7 (280-339)||(3903330-3903389)
chr7 (288-339)||(19067639-19067690)
chr7 (285-340)||(38225971-38226026)
chr7 (294-337)||(43065121-43065164)
chr7 (288-346)||(3219545-3219603)
chr7 (265-339)||(19068372-19068445)
chr7 (286-344)||(25343236-25343294)
chr7 (294-340)||(31278159-31278205)
chr7 (407-487)||(7171571-7171652)
chr7 (286-339)||(18977766-18977819)
chr7 (288-340)||(42421049-42421101)
[»] chr6 (19 HSPs)
chr6 (99-224)||(8496384-8496510)
chr6 (14-82)||(8496322-8496389)
chr6 (288-346)||(10171271-10171329)
chr6 (257-339)||(19323735-19323816)
chr6 (288-346)||(26528818-26528876)
chr6 (283-344)||(8488466-8488527)
chr6 (289-346)||(19310996-19311053)
chr6 (288-344)||(10171964-10172020)
chr6 (253-344)||(19322979-19323070)
chr6 (288-344)||(26529511-26529567)
chr6 (281-346)||(18227727-18227791)
chr6 (294-346)||(33435335-33435387)
chr6 (288-346)||(3623745-3623803)
chr6 (288-346)||(12344889-12344947)
chr6 (294-339)||(19311831-19311876)
chr6 (285-346)||(25060811-25060872)
chr6 (294-339)||(33436278-33436323)
chr6 (288-344)||(3623172-3623228)
chr6 (294-346)||(21133231-21133283)
[»] chr1 (45 HSPs)
chr1 (227-344)||(13262830-13262947)
chr1 (206-309)||(8548852-8548955)
chr1 (253-346)||(49680806-49680898)
chr1 (293-349)||(10120775-10120831)
chr1 (278-344)||(30932784-30932850)
chr1 (262-346)||(8987785-8987869)
chr1 (288-344)||(10121551-10121607)
chr1 (288-349)||(32038469-32038530)
chr1 (285-345)||(169623-169683)
chr1 (259-339)||(11548802-11548881)
chr1 (285-340)||(7558450-7558505)
chr1 (283-346)||(30663970-30664033)
chr1 (288-339)||(34309229-34309280)
chr1 (294-340)||(4433852-4433898)
chr1 (256-338)||(19171781-19171863)
chr1 (294-344)||(25469091-25469141)
chr1 (283-349)||(30663350-30663416)
chr1 (285-346)||(11704804-11704865)
chr1 (293-346)||(19172579-19172632)
chr1 (293-346)||(36390371-36390424)
chr1 (295-340)||(37577651-37577696)
chr1 (288-344)||(13263515-13263571)
chr1 (294-346)||(17172667-17172719)
chr1 (294-346)||(24991965-24992017)
chr1 (278-346)||(25733169-25733237)
chr1 (294-346)||(43252479-43252530)
chr1 (295-346)||(13142673-13142724)
chr1 (294-340)||(4439211-4439257)
chr1 (288-346)||(7406240-7406298)
chr1 (285-339)||(7559195-7559249)
chr1 (288-346)||(25468505-25468563)
chr1 (265-339)||(27256689-27256762)
chr1 (265-339)||(34308475-34308548)
chr1 (288-346)||(37576919-37576977)
chr1 (295-340)||(17171932-17171977)
chr1 (298-339)||(26118675-26118716)
chr1 (294-339)||(36389777-36389822)
chr1 (295-344)||(45818018-45818067)
chr1 (294-339)||(47967864-47967909)
chr1 (288-340)||(168891-168943)
chr1 (288-344)||(8988547-8988603)
chr1 (280-344)||(25671167-25671231)
chr1 (294-346)||(28182077-28182129)
chr1 (295-339)||(46391872-46391916)
chr1 (279-339)||(46909352-46909412)
[»] scaffold0176 (1 HSPs)
scaffold0176 (281-346)||(26587-26652)
[»] scaffold0504 (1 HSPs)
scaffold0504 (295-346)||(5385-5436)
[»] scaffold0093 (1 HSPs)
scaffold0093 (283-344)||(23722-23783)
[»] scaffold0085 (1 HSPs)
scaffold0085 (295-339)||(22076-22120)
[»] scaffold1207 (1 HSPs)
scaffold1207 (288-339)||(1589-1640)
[»] scaffold0096 (1 HSPs)
scaffold0096 (295-346)||(39891-39942)
[»] scaffold0086 (1 HSPs)
scaffold0086 (288-346)||(8290-8348)
[»] scaffold2007 (1 HSPs)
scaffold2007 (294-346)||(746-798)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 5 - 343
Target Start/End: Complemental strand, 46168474 - 46168137
Alignment:
Q  5 gaggagcacagaggagcactgagatgatttcattcaaattgagtttcaagccaattactttactggccgtgaataattggtggtgtatagttagataatt 104  Q
    ||||| || ||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  46168474 gaggaacaaagaggagaacggagatgatttcattcaaattgagtttcaagccaattactttacgggctgtgaataattggtggtgtatagttagataatt 46168375  T
Q  105 tgagatcggccaaaagaaactcttgaataaacggtggctgtacatacaggtggtggctgatttcattcctggttttttaggcacaaaattgaaacaaagc 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  46168374 tgagatcggccaaaagaaactcttgaataaacggtggctgtacatacaagtggtggctgatttcattccaggttttttaggcactaaattgaaacaaagc 46168275  T
Q  205 gtgattgggtgcagcaagaaagttggaaatttatggagaccatttaatgaaaattatgagcctttgatcaaacttaaatgaatggttgggatttggtgtc 304  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||    
T  46168274 gtgatcgggtgcagcaagaaagttggaaatttatggagaccatttaatgaaaattatgag-ctttgatcaaacttaaatgaatggttaggatttagtgtc 46168176  T
Q  305 aacaaatccgttgacacctagtatcaacggatcctaact 343  Q
    ||||| |||||||||||||  | ||||||||||||||||    
T  46168175 aacaattccgttgacacctgatgtcaacggatcctaact 46168137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 202 - 339
Target Start/End: Complemental strand, 19080525 - 19080388
Alignment:
Q  202 agcgtgattgggtgcagcaagaaagttggaaatttatggagaccatttaatgaaaattatgagcctttgatcaaacttaaatgaatggttgggatttggt 301  Q
    |||||||||  || || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||  |||||||    
T  19080525 agcgtgattccgtacatcaagaaagttggaaatttatggagaccatttaatgagaattatgagcctttgataaaacttaaatgaatggttgaaatttggt 19080426  T
Q  302 gtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    |||||| ||||||||||||||| || ||||| ||||||    
T  19080425 gtcaacgaatccgttgacacctggtgtcaacagatcct 19080388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 24374875 - 24374787
Alignment:
Q  256 aattatgagcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    |||||| |||||||||||||||||||||| | ||||| |||||||||||||| ||| |||||||| || || |||||||||||| ||||    
T  24374875 aattataagcctttgatcaaacttaaatggaaggttgagatttggtgtcaacgaattcgttgacagctggtgtcaacggatcctgactc 24374787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 47688478 - 47688534
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||| |||||||||||||| ||||||||||||||| || |||||||||||||||||    
T  47688478 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactc 47688534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 12368666 - 12368712
Alignment:
Q  300 gtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||    
T  12368666 gtgtcaacaaatccgttgacacctagtgtcaacggatcctgactcat 12368712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 26147031 - 26147089
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||| |||||||||||||| ||| ||||||||||| || |||||||||||||||||||    
T  26147031 ggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctaactcat 26147089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 280 - 346
Target Start/End: Original strand, 31329708 - 31329774
Alignment:
Q  280 aaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||| ||||||| ||||||||||| ||| ||||||||||||||| || |||||||||||| ||||||    
T  31329708 aaatcaatggttaggatttggtgttaacgaatccgttgacacctggtgtcaacggatcctgactcat 31329774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 52871346 - 52871292
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcattt 348  Q
    |||||||||||||| ||||||||||||||| || |||||||||| ||||||||||    
T  52871346 gatttggtgtcaacgaatccgttgacacctggtgtcaacggatcttaactcattt 52871292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 1866399 - 1866342
Alignment:
Q  286 atggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaact 343  Q
    ||||||| |||||||||||||| ||| | |||||||||||| ||||||||||||||||    
T  1866399 atggttgagatttggtgtcaacgaattcattgacacctagtgtcaacggatcctaact 1866342  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 2444419 - 2444370
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||||||    
T  2444419 atttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactc 2444370  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 53772854 - 53772805
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||||||    
T  53772854 atttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactc 53772805  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 24551928 - 24551980
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||||||||||||||||||||||| || |||| |||||||| |||||    
T  24551928 gatttggtgtcaacaaatccgttgacacctggtgtcaatggatcctatctcat 24551980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 53773591 - 53773643
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||||||| |||||||||||||||  | |||||||||||||||||||    
T  53773591 gatttggtgtcaacgaatccgttgacacctgatgtcaacggatcctaactcat 53773643  T

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Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 20774174 - 20774237
Alignment:
Q  283 tgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||| ||||| |||||||||||||| ||||||||||||||| || |||| ||||||| ||||||    
T  20774174 tgaacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctgactcat 20774237  T

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Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 346
Target Start/End: Original strand, 142491 - 142581
Alignment:
Q  256 aattatgagcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||||||||||||| |||  || ||| ||||||  |||||||||||||  ||| ||||||||||  || ||||||||||||| |||||    
T  142491 aattatgagcctttgattaaaaatagatggatggttaagatttggtgtcaatgaattcgttgacacccggtgtcaacggatcctatctcat 142581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 344
Target Start/End: Original strand, 42882686 - 42882736
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    |||||||||||||| |||||||||||| || || |||||||||||||||||    
T  42882686 gatttggtgtcaacgaatccgttgacatctggtgtcaacggatcctaactc 42882736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 346
Target Start/End: Complemental strand, 47687963 - 47687905
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||| |||||||||||||| ||| |||| |||||| || |||||||||||||||||||    
T  47687963 ggttgcgatttggtgtcaacgaattcgttaacacctggtgtcaacggatcctaactcat 47687905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 344
Target Start/End: Original strand, 47785796 - 47785854
Alignment:
Q  286 atggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||||| |||||||||||||| ||||||||||||||| || ||||| |||||| ||||    
T  47785796 atggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacagatcctgactc 47785854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 285 - 346
Target Start/End: Original strand, 2446157 - 2446218
Alignment:
Q  285 aatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||| || |||||||||| ||| |||| |||||||||| || |||||||||||||||||||    
T  2446157 aatggatgagatttggtgttaacgaatctgttgacacctggtgtcaacggatcctaactcat 2446218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 287 - 344
Target Start/End: Complemental strand, 9365224 - 9365167
Alignment:
Q  287 tggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    |||||| |||||||||||||||||| ||||||||||| || | |||||||||| ||||    
T  9365224 tggttgagatttggtgtcaacaaattcgttgacacctggtgttaacggatcctgactc 9365167  T

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Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 8248525 - 8248577
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||||||| |||||||||||| || || |||||||||||| ||||||    
T  8248525 gatttggtgtcaacgaatccgttgacatctggtgtcaacggatcctgactcat 8248577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 8266190 - 8266242
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||||||| |||||||||||| || || |||||||||||| ||||||    
T  8266190 gatttggtgtcaacgaatccgttgacatctggtgtcaacggatcctgactcat 8266242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 30573708 - 30573764
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||| |||||||||||||| ||||||||||||||| || |||| ||||||| ||||    
T  30573708 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctgactc 30573764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 338
Target Start/End: Complemental strand, 50184475 - 50184432
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcc 338  Q
    ||||||||||||| |||||||||||||||  |||||||||||||    
T  50184475 atttggtgtcaacgaatccgttgacacctgatatcaacggatcc 50184432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 53147925 - 53147874
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    |||||||||||||||||||| |||||||||||| || || |||| |||||||    
T  53147925 ggttgggatttggtgtcaacgaatccgttgacatctggtgtcaatggatcct 53147874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 53732489 - 53732438
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    ||||| ||||| |||||||| ||||||||||||||| || ||||||||||||    
T  53732489 ggttgagatttagtgtcaacgaatccgttgacacctggtgtcaacggatcct 53732438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 599306 - 599352
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatccta 340  Q
    |||||||||||||| ||||||||||||||  || |||||||||||||    
T  599306 gatttggtgtcaacgaatccgttgacaccaggtgtcaacggatccta 599352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 269 - 343
Target Start/End: Original strand, 11939422 - 11939495
Alignment:
Q  269 tgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaact 343  Q
    |||||||||| || |||| ||||| ||||| |||||||| |||||||||||||   || ||||||||||||||||    
T  11939422 tgatcaaactaaattgaa-ggttgagatttcgtgtcaacgaatccgttgacactaggtgtcaacggatcctaact 11939495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 288 - 338
Target Start/End: Original strand, 16903642 - 16903692
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcc 338  Q
    ||||| |||||||||||||| ||||||||||||||| || |||||| ||||    
T  16903642 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacgaatcc 16903692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 294 - 336
Target Start/End: Complemental strand, 55976214 - 55976172
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggat 336  Q
    |||||||||||||| ||||||||||||||| || |||||||||    
T  55976214 gatttggtgtcaacgaatccgttgacacctggtgtcaacggat 55976172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 1465383 - 1465318
Alignment:
Q  279 taaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    |||||| ||||||| |||||| ||||||  |||| |||||||||| || |||||||||||| ||||    
T  1465383 taaatggatggttgtgatttgatgtcaatgaatctgttgacacctggtgtcaacggatcctgactc 1465318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 3654520 - 3654565
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    |||||||||||||| ||||||||||||||| |  ||||||||||||    
T  3654520 gatttggtgtcaacgaatccgttgacacctggcgtcaacggatcct 3654565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 5046062 - 5046003
Alignment:
Q  263 agcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacct 323  Q
    |||||||||| ||| | |||| || ||||| |||||||||||||| |||||||||||||||    
T  5046062 agcctttgattaaa-taaaataaacggttgagatttggtgtcaacgaatccgttgacacct 5046003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 5590140 - 5590097
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    ||||| ||||||| ||||||||||||||| |||||||||||||||    
T  5590140 atttgttgtcaacgaatccgttgacacct-gtatcaacggatcct 5590097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 7841592 - 7841540
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||||||| |||||||| ||||||  | |||||||||||| ||||||    
T  7841592 gatttggtgtcaacgaatccgttaacacctgatgtcaacggatcctgactcat 7841540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 16903677 - 16903725
Alignment:
Q  298 tggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||| ||||||||||||||| || |||||| ||||| ||||||    
T  16903677 tggtgtcaacgaatccgttgacacctggtgtcaacgaatcctgactcat 16903725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 19550333 - 19550289
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    ||||||||||||| ||||||||||||||| || |||| |||||||    
T  19550333 atttggtgtcaacgaatccgttgacacctggtgtcaagggatcct 19550289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 26159620 - 26159672
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatccta 340  Q
    ||||| |||||||||||||| ||||||||||||| |  | |||||||||||||    
T  26159620 ggttgcgatttggtgtcaacgaatccgttgacacttgatgtcaacggatccta 26159672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 48128230 - 48128273
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    ||||| ||||||| ||||||||||||||| |||||||||||||||    
T  48128230 atttgttgtcaacgaatccgttgacacct-gtatcaacggatcct 48128273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 203; Significance: 1e-110; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 357 - 603
Target Start/End: Original strand, 36233344 - 36233590
Alignment:
Q  357 gtctaactattcattgagatatattatatttcaatcaaatttttcttcttcataagattaggtccagaagcttcaagaagcacaatcatcaatggctgcc 456  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36233344 gtctaactattcattgagatatattatatttcaatcaaatttttcttcttcataagattaggtccagaagcttcaagaagcacaatcatcaatggctgtc 36233443  T
Q  457 attgagatagatattctctatttgtacacaaacaagtgcctgcacataatcactcctcaattgattttcgaatgttggatttgattatctcatctgaaac 556  Q
    | ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36233444 actgagatatatattctctatttgtacacaaacaagtggctgcacataatcactcctcaattgatttccgaatgttggatttgattatctcatctgaaac 36233543  T
Q  557 caattttacgggatatggctttaccttcactgatgggtggaagcatt 603  Q
    |||||||  ||||| |||||||||||||| || ||||| ||||||||    
T  36233544 caattttgtgggatctggctttaccttcaatggtgggtagaagcatt 36233590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 263 - 344
Target Start/End: Original strand, 46150704 - 46150784
Alignment:
Q  263 agcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    |||||||||||||| | |||| |||||||| |||||||||||||| |||||||||||||||||| |||||||||||| ||||    
T  46150704 agcctttgatcaaa-taaaataaatggttgagatttggtgtcaacgaatccgttgacacctagtgtcaacggatcctgactc 46150784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 220 - 344
Target Start/End: Original strand, 11349367 - 11349491
Alignment:
Q  220 aagaaagttggaaatttatggagaccatttaatgaaaattatgagcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgac 319  Q
    ||||||| || ||||||||||||||  |||||||| |||| |||||||||||||||||||||||| ||||||| | ||||  |||||| ||||| |||||    
T  11349367 aagaaaggtgaaaatttatggagactttttaatgagaattgtgagcctttgatcaaacttaaatggatggttgtgttttgacgtcaacgaatccattgac 11349466  T
Q  320 acctagtatcaacggatcctaactc 344  Q
       |  | |||||||||||||||||    
T  11349467 gtttgatgtcaacggatcctaactc 11349491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 55373695 - 55373761
Alignment:
Q  278 ttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||| || |||||| ||||| ||||    
T  55373695 ttaaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgtcaacgaatcctgactc 55373761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 263 - 345
Target Start/End: Original strand, 45081378 - 45081459
Alignment:
Q  263 agcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactca 345  Q
    |||||||||||||| | |||| |||||||| |||||||||||||| |||||||||||||   || |||||||||||| |||||    
T  45081378 agcctttgatcaaa-taaaataaatggttgagatttggtgtcaacgaatccgttgacactaggtgtcaacggatcctgactca 45081459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 37520558 - 37520611
Alignment:
Q  286 atggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    ||||||| |||||||||||||| ||| ||||||||||| |||||||||||||||    
T  37520558 atggttgagatttggtgtcaacgaattcgttgacacctggtatcaacggatcct 37520611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 41458087 - 41458031
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||| |||||||||||||| ||||||||||||||| ||||||||| ||||| ||||    
T  41458087 ggttgagatttggtgtcaacgaatccgttgacacctggtatcaacgaatcctgactc 41458031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 48648251 - 48648199
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||||||| ||||||||||||||| || |||||||||||| ||||||    
T  48648251 gatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcat 48648199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 284 - 343
Target Start/End: Complemental strand, 264524 - 264465
Alignment:
Q  284 gaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaact 343  Q
    ||||| ||| |||||||||||||||||||| ||||||||| || |||| |||||||||||    
T  264524 gaatgcttgagatttggtgtcaacaaatccattgacacctggtgtcaatggatcctaact 264465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 261 - 348
Target Start/End: Complemental strand, 13701612 - 13701525
Alignment:
Q  261 tgagcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcattt 348  Q
    |||| ||||||||||||||||||| | ||||| ||||| |||||||  |||||||||| | ||  |||||||| ||||||||| ||||    
T  13701612 tgagtctttgatcaaacttaaatggagggttgagatttcgtgtcaatgaatccgttgatatctgatatcaacgaatcctaacttattt 13701525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 263 - 346
Target Start/End: Complemental strand, 27082855 - 27082772
Alignment:
Q  263 agcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||| ||||| ||||| ||| | | |||| ||||||||||||||| ||| |||||||||||||| |||| ||||||| ||||||    
T  27082855 agccattgattaaactgaaacggaaggttaggatttggtgtcaacgaattcgttgacacctagtgtcaatggatcctgactcat 27082772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 346
Target Start/End: Complemental strand, 13477115 - 13477053
Alignment:
Q  284 gaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||| ||||||||||||||  ||| ||||||||||| || |||||||||||| ||||||    
T  13477115 gaatggttaggatttggtgtcaatgaattcgttgacacctggtgtcaacggatcctgactcat 13477053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 17603216 - 17603170
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatccta 340  Q
    |||||||||||||| ||||||||||||||| || |||||||||||||    
T  17603216 gatttggtgtcaacgaatccgttgacacctggtgtcaacggatccta 17603170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 340
Target Start/End: Complemental strand, 31974707 - 31974653
Alignment:
Q  286 atggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatccta 340  Q
    ||||||| |||||||||||||| ||||||||||||| | || |||||||||||||    
T  31974707 atggttgagatttggtgtcaacgaatccgttgacacttggtgtcaacggatccta 31974653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 21727534 - 21727579
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    |||||||||||||| ||||||||||||||| || ||||||||||||    
T  21727534 gatttggtgtcaacgaatccgttgacacctggtgtcaacggatcct 21727579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 293 - 346
Target Start/End: Original strand, 54458669 - 54458722
Alignment:
Q  293 ggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||||||||||| ||||||||||||||  || |||||||||||||| ||||    
T  54458669 ggatttggtgtcaaccaatccgttgacaccaggtgtcaacggatcctaattcat 54458722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 338
Target Start/End: Original strand, 31115604 - 31115648
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcc 338  Q
    |||||||||||||| |||| ||||||||||||| |||||||||||    
T  31115604 gatttggtgtcaacgaatctgttgacacctagtgtcaacggatcc 31115648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 337
Target Start/End: Original strand, 265103 - 265146
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatc 337  Q
    |||||||||||||| ||||||||||||||| || ||||||||||    
T  265103 gatttggtgtcaacgaatccgttgacacctggtgtcaacggatc 265146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 343
Target Start/End: Complemental strand, 8950021 - 8949934
Alignment:
Q  256 aattatgagcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaact 343  Q
    ||||||||||||||||| |||  || ||| ||||||  ||||| ||||||||  || ||||||||| | || ||||||||||||||||    
T  8950021 aattatgagcctttgattaaaaatagatggatggttaagattttgtgtcaacggattcgttgacacatggtgtcaacggatcctaact 8949934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 294 - 344
Target Start/End: Complemental strand, 14871201 - 14871151
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    |||||||||||||| ||| ||||||||||| || |||||||||||| ||||    
T  14871201 gatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctgactc 14871151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 346
Target Start/End: Complemental strand, 20213029 - 20212976
Alignment:
Q  293 ggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||||||||||| ||| ||||||||||| || ||||||||| || ||||||    
T  20213029 ggatttggtgtcaacgaattcgttgacacctggtgtcaacggattctgactcat 20212976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 346
Target Start/End: Original strand, 37988214 - 37988275
Alignment:
Q  285 aatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||| || |||||||||||||| ||| ||||||||||| || |||| ||||||| ||||||    
T  37988214 aatggctgagatttggtgtcaacgaattcgttgacacctggtgtcaatggatcctgactcat 37988275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 51469284 - 51469333
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaact 343  Q
    |||||||||||||| ||||||||||||| |  | ||||||||||||||||    
T  51469284 gatttggtgtcaacgaatccgttgacacttgatgtcaacggatcctaact 51469333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 336
Target Start/End: Complemental strand, 52281821 - 52281772
Alignment:
Q  287 tggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggat 336  Q
    |||||| ||| |||||||||| ||||||||||||||  ||||||||||||    
T  52281821 tggttgagatctggtgtcaacgaatccgttgacaccaggtatcaacggat 52281772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 336
Target Start/End: Complemental strand, 981721 - 981673
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggat 336  Q
    ||||| |||||||||||||| ||| ||||||||||| || |||||||||    
T  981721 ggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggat 981673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 17603966 - 17604018
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||||||| ||||||||||||||| || |||  |||||||| |||||    
T  17603966 gatttggtgtcaacgaatccgttgacacctggtgtcattggatcctatctcat 17604018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 20213530 - 20213586
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    |||| ||||||||||||||| ||| ||| ||||||| || |||||||||||| ||||    
T  20213530 ggttaggatttggtgtcaacgaattcgtcgacacctggtgtcaacggatcctgactc 20213586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 23706800 - 23706859
Alignment:
Q  286 atggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||| |||||||||||||| |||  |||||||||| || ||||||||| |||||||||    
T  23706800 atggttgagatttggtgtcaacgaatatgttgacacct-gtgtcaacggattctaactcat 23706859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 23725256 - 23725315
Alignment:
Q  286 atggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||| |||||||||||||| |||  |||||||||| || ||||||||| |||||||||    
T  23725256 atggttgagatttggtgtcaacgaatatgttgacacct-gtgtcaacggattctaactcat 23725315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 23743712 - 23743771
Alignment:
Q  286 atggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||| |||||||||||||| |||  |||||||||| || ||||||||| |||||||||    
T  23743712 atggttgagatttggtgtcaacgaatatgttgacacct-gtgtcaacggattctaactcat 23743771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 343
Target Start/End: Original strand, 40872814 - 40872862
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcctaact 343  Q
    ||||||||||||  ||||||||||||||| || |||||||||| |||||    
T  40872814 atttggtgtcaatgaatccgttgacacctggtgtcaacggatcttaact 40872862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 48413373 - 48413329
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaac 332  Q
    ||||| |||||||||||||| ||||||||||||||| || |||||    
T  48413373 ggttgtgatttggtgtcaacgaatccgttgacacctggtgtcaac 48413329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 193; Significance: 1e-104; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 5 - 346
Target Start/End: Original strand, 12725330 - 12725671
Alignment:
Q  5 gaggagcacagaggagcactgagatgatttcattcaaattgagtttcaagccaattactttactggccgtgaataattggtggtgtatagttagataatt 104  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  12725330 gaggaacaaagaggagcactgagatgatttcattcaaattgagtttcaagccaattactttactggctctgaataattggtggtgtatagttagataatt 12725429  T
Q  105 tgagatcggccaaaagaaactcttgaataaacggtggctgtacatacaggtggtggctgatttcattcctggttttttaggcacaaaattgaaacaaagc 204  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||        
T  12725430 tgagatctgccaaaagaaactcttgaataaacggtggttgtacatacaaatggtggctgatttcattcctggttttttaagcacaaaattgaaaca---- 12725525  T
Q  205 gtgattgggtgcagcaagaaagttggaaatttatggagaccatttaatgaaaat-------------------tatgagcctttgatcaaacttaaatga 285  Q
                   |||||||||||||||||||||||||||||||||||||||                   |||||||||||||||||||||||||||    
T  12725526 ---------------aagaaagttggaaatttatggagaccatttaatgaaaattatgagctttaataaaaattatgagcctttgatcaaacttaaatga 12725610  T
Q  286 atggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  12725611 atggttgggatttggtgtcaacaaatccgttgacacctggtgtcaacggatcctaactcat 12725671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 214 - 339
Target Start/End: Complemental strand, 24933964 - 24933839
Alignment:
Q  214 tgcagcaagaaagttggaaatttatggagaccatttaatgaaaattatgagcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatcc 313  Q
    |||| ||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||  ||| |    
T  24933964 tgcatcaagaaagttaaaaatttatggagaccatttaatgagaattatgagcctttgatcaaacttaaatgaatggttgagatttggtgtcaatgaattc 24933865  T
Q  314 gttgacacctagtatcaacggatcct 339  Q
    |||||||||  || ||||||||||||    
T  24933864 gttgacaccaggtgtcaacggatcct 24933839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 202 - 332
Target Start/End: Complemental strand, 11007371 - 11007241
Alignment:
Q  202 agcgtgattgggtgcagcaagaaagttggaaatttatggagaccatttaatgaaaattatgagcctttgatcaaacttaaatgaatggttgggatttggt 301  Q
    ||||||||| |||||| ||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||| || | |||||||||| ||||| ||    
T  11007371 agcgtgattcggtgcatcaagaaagttgaaaatttgtggagaccatttaatgagaattatgagcctttgatcaaatttgattgaatggttgagatttagt 11007272  T
Q  302 gtcaacaaatccgttgacacctagtatcaac 332  Q
    |||||| ||||||||||||||| || |||||    
T  11007271 gtcaacgaatccgttgacacctggtgtcaac 11007241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 243 - 339
Target Start/End: Complemental strand, 29719545 - 29719449
Alignment:
Q  243 accatttaatgaaaattatgagcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    |||||| | ||| |||||||||| |||||||||||||||||| | ||||| |||||||||||||| ||||||||||||||| || ||||||||||||    
T  29719545 accattaactgagaattatgagcatttgatcaaacttaaatggagggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcct 29719449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 1297119 - 1297179
Alignment:
Q  286 atggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||| |||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  1297119 atggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactcat 1297179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 9275642 - 9275582
Alignment:
Q  286 atggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||| |||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  9275642 atggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactcat 9275582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 11750316 - 11750255
Alignment:
Q  283 tgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    |||| ||||| |||||||||||||| ||||||||||||||| || |||| ||||||||||||    
T  11750316 tgaacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctaactc 11750255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 293 - 346
Target Start/End: Original strand, 23857027 - 23857080
Alignment:
Q  293 ggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||||||||||| ||||||||||||||  || |||||||||||||||||||    
T  23857027 ggatttggtgtcaaccaatccgttgacaccaggtgtcaacggatcctaactcat 23857080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 9276326 - 9276386
Alignment:
Q  286 atggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||| |||||||||||||| ||| ||||||||||| || |||||||||||| ||||||    
T  9276326 atggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctgactcat 9276386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 18820518 - 18820451
Alignment:
Q  256 aattatgagcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacct 323  Q
    ||||| ||||| ||||| ||||| ||||| | |||| ||||||||||||||| |||||||||||||||    
T  18820518 aattacgagccattgattaaactgaaatggaaggttaggatttggtgtcaacgaatccgttgacacct 18820451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 265 - 344
Target Start/End: Complemental strand, 36237707 - 36237629
Alignment:
Q  265 cctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    |||||||||||| | |||| ||||||||  ||||||||||||  ||||||||||||||| || |||||||||||| ||||    
T  36237707 cctttgatcaaa-taaaataaatggttgaaatttggtgtcaatgaatccgttgacacctggtgtcaacggatcctgactc 36237629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 344
Target Start/End: Complemental strand, 1296435 - 1296377
Alignment:
Q  286 atggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||||| |||||||||||||| ||| ||||||||||| || |||||||||||| ||||    
T  1296435 atggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctgactc 1296377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 340
Target Start/End: Complemental strand, 15774258 - 15774204
Alignment:
Q  286 atggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatccta 340  Q
    ||||||| |||||||||||||||||| ||||||||||  || |||||||||||||    
T  15774258 atggttgagatttggtgtcaacaaattcgttgacaccaggtgtcaacggatccta 15774204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 18174668 - 18174726
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||| |||||||||||||| ||| |||||||||||  | |||||||||||||||||||    
T  18174668 ggttgagatttggtgtcaacgaattcgttgacacctgatgtcaacggatcctaactcat 18174726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 346
Target Start/End: Original strand, 29559410 - 29559476
Alignment:
Q  280 aaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||| ||| ||| |||||||||||||| ||| ||||||||||| || ||||| |||||||||||||    
T  29559410 aaatggatgattgagatttggtgtcaacgaattcgttgacacctggtgtcaacagatcctaactcat 29559476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 8542537 - 8542597
Alignment:
Q  279 taaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    ||||| || ||||| |||||||||||||| |||||||||||||||||| || | |||||||    
T  8542537 taaatcaacggttgagatttggtgtcaacgaatccgttgacacctagtgtccatggatcct 8542597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 11751073 - 11751125
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||| ||| ||| ||||||||||| || |||||||||||||||||||    
T  11751073 gatttggtgttaacgaattcgttgacacctggtgtcaacggatcctaactcat 11751125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 18174153 - 18174097
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||| |||||||||||||| ||| |||| |||||| || |||||||||||||||||    
T  18174153 ggttgcgatttggtgtcaacgaattcgttaacacctggtgtcaacggatcctaactc 18174097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 22560566 - 22560622
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||| |||||||||||||| |||||||||||||||  | |||||||||||| ||||    
T  22560566 ggttgagatttggtgtcaacgaatccgttgacacctgatgtcaacggatcctgactc 22560622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 42182613 - 42182669
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||| |||||||||||||| ||||| ||||||||| || ||||||| |||||||||    
T  42182613 ggttgagatttggtgtcaacgaatcccttgacacctggtgtcaacgggtcctaactc 42182669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 339
Target Start/End: Complemental strand, 9540393 - 9540334
Alignment:
Q  280 aaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    |||| |||||||  |||||||||||||| ||| ||||||||||| || ||||||||||||    
T  9540393 aaatcaatggttaagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcct 9540334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 340
Target Start/End: Original strand, 22301865 - 22301920
Alignment:
Q  285 aatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatccta 340  Q
    |||||||  |||||||||||||| ||| ||||||||||| || |||||||||||||    
T  22301865 aatggttaagatttggtgtcaacgaattcgttgacacctggtgtcaacggatccta 22301920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 27177959 - 27177908
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||||||||| ||| ||||||||||| || ||||||||||||| |||||    
T  27177959 atttggtgtcaacgaattcgttgacacctggtgtcaacggatcctatctcat 27177908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 339
Target Start/End: Original strand, 34812846 - 34812905
Alignment:
Q  280 aaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    |||| ||||||| ||||||||||| ||| |||||||||||| || || ||||||||||||    
T  34812846 aaatcaatggttaggatttggtgttaacgaatccgttgacaactggtgtcaacggatcct 34812905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 27178649 - 27178695
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatccta 340  Q
    |||||||||||||  ||||||||||||||| || |||||||||||||    
T  27178649 gatttggtgtcaaacaatccgttgacacctggtgtcaacggatccta 27178695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 29513151 - 29513197
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatccta 340  Q
    |||||||||||||| ||||||||||||||| || |||| ||||||||    
T  29513151 gatttggtgtcaacgaatccgttgacacctggtgtcaatggatccta 29513197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 346
Target Start/End: Original strand, 6584218 - 6584283
Alignment:
Q  281 aatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||| ||||||| |||||||||||||| ||||||||||||| | || |||| |||| || ||||||    
T  6584218 aatggatggttgtgatttggtgtcaacgaatccgttgacacttggtgtcaatggattctgactcat 6584283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 8713482 - 8713523
Alignment:
Q  282 atgaatggttgggatttggtgtcaacaaatccgttgacacct 323  Q
    ||||||||||||||||||||||||| || || ||||||||||    
T  8713482 atgaatggttgggatttggtgtcaataactctgttgacacct 8713523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 15902886 - 15902931
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    ||||| |||||||| ||||||||||||||| || ||||||||||||    
T  15902886 gattttgtgtcaacgaatccgttgacacctggtgtcaacggatcct 15902931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 8669189 - 8669229
Alignment:
Q  283 tgaatggttgggatttggtgtcaacaaatccgttgacacct 323  Q
    ||||| ||||||||||||||||||| |||| ||||||||||    
T  8669189 tgaattgttgggatttggtgtcaacgaatctgttgacacct 8669229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 12724795 - 12724739
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||||||||| |||||||| |||||||||| | || || |||||| ||||||||||    
T  12724795 ggttgggatttagtgtcaacgaatccgttgataactggtgtcaacgaatcctaactc 12724739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 23856689 - 23856633
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||| |||||||||||||  ||||||||||||||  || |||||||||| ||||||    
T  23856689 ggttgagatttggtgtcaatcaatccgttgacaccaggtgtcaacggatcttaactc 23856633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 29512419 - 29512367
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||||||||||| ||||||||||  || |||||||||| | ||||||    
T  29512419 gatttggtgtcaacaaattcgttgacaccaggtgtcaacggatcatgactcat 29512367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 1e-67; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 437 - 603
Target Start/End: Original strand, 22631625 - 22631791
Alignment:
Q  437 cacaatcatcaatggctgccattgagatagatattctctatttgtacacaaacaagtgcctgcacataatcactcctcaattgattttcgaatgttggat 536  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  22631625 cacaatcatcaatggctgccactgagatagatattctctatttgtacacaaacaagtggctgcacataatcactcctcaattgatttccgaatgttggat 22631724  T
Q  537 ttgattatctcatctgaaaccaattttacgggatatggctttaccttcactgatgggtggaagcatt 603  Q
    ||||||||||||||||||||||||||| |||||| ||| ||||||||||||  ||||| ||||||||    
T  22631725 ttgattatctcatctgaaaccaattttgcgggatctggttttaccttcactagtgggtagaagcatt 22631791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 402 - 603
Target Start/End: Complemental strand, 28323680 - 28323487
Alignment:
Q  402 ttcttcataagattaggtccagaagcttcaagaagcacaatcatcaatggctgccattgagatagatattctctatttgtacacaaacaagtgcctgcac 501  Q
    |||||||||| |||||||||||||| ||||||||||||||| |||||||||| | | |||||||  |||| |||||||||||||||||||||| ||||||    
T  28323680 ttcttcataaaattaggtccagaagtttcaagaagcacaattatcaatggctactactgagata--tattttctatttgtacacaaacaagtggctgcac 28323583  T
Q  502 ataatcactcctcaattgattttcgaatgttggatttgattatctcatctgaaaccaattttacgggatatggctttaccttcactgatgggtggaagca 601  Q
     |||||||||||||||||||||  |||||||||||||||||     ||||||||||| |||| | |||| ||||||||||||||||| |||  |||||||    
T  28323582 ttaatcactcctcaattgatttatgaatgttggatttgatt-----atctgaaaccagttttgc-ggatctggctttaccttcactggtggcaggaagca 28323489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 256 - 346
Target Start/End: Complemental strand, 14825729 - 14825639
Alignment:
Q  256 aattatgagcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||||||| ||||| ||||| ||||| | |||| ||||||| ||||||| |||||||||||||||||| |||||||||||||||||||    
T  14825729 aattatgagccattgattaaactgaaatggaaggttaggatttgatgtcaacgaatccgttgacacctagtgtcaacggatcctaactcat 14825639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 8996970 - 8997030
Alignment:
Q  286 atggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||| ||||||||||||||||||| |||||||||| ||||||||||||||| ||||||    
T  8996970 atggttgagatttggtgtcaacaaatcagttgacacctggtatcaacggatcctgactcat 8997030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 38576298 - 38576358
Alignment:
Q  286 atggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||| |||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  38576298 atggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactcat 38576358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 281 - 346
Target Start/End: Complemental strand, 41974701 - 41974636
Alignment:
Q  281 aatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||||| || |||||||||||||| ||||||||||||||| || |||||||||||| ||||||    
T  41974701 aatgaatggctgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcat 41974636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 344
Target Start/End: Complemental strand, 22320422 - 22320372
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    |||||||||||||| ||||||||||||||| | ||||||||||||| ||||    
T  22320422 gatttggtgtcaacgaatccgttgacacctggcatcaacggatcctgactc 22320372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 32979812 - 32979878
Alignment:
Q  278 ttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    |||||| ||||| || |||||||||| ||||||| ||||||||||| || |||||||||||| ||||    
T  32979812 ttaaatcaatggatgtgatttggtgttaacaaattcgttgacacctggtgtcaacggatcctgactc 32979878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 3165126 - 3165178
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||||||| |||||||||||||||  | |||||||||||| ||||||    
T  3165126 gatttggtgtcaacgaatccgttgacacctgatgtcaacggatcctgactcat 3165178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 11686274 - 11686222
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||||||| ||||||||||||||| ||  ||| ||||||||||||||    
T  11686274 gatttggtgtcaacgaatccgttgacacctggtgccaatggatcctaactcat 11686222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 31602070 - 31602014
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||| |||||||||||||| ||| ||||||||||| || ||||| |||||||||||    
T  31602070 ggttgagatttggtgtcaacgaattcgttgacacctggtgtcaaccgatcctaactc 31602014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 347
Target Start/End: Complemental strand, 3043300 - 3043237
Alignment:
Q  284 gaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcatt 347  Q
    |||||||| ||||||||||||||  |||  |||||||||  || ||||||||||||||||||||    
T  3043300 gaatggttaggatttggtgtcaatgaatttgttgacaccaggtgtcaacggatcctaactcatt 3043237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 332
Target Start/End: Original strand, 14754052 - 14754091
Alignment:
Q  293 ggatttggtgtcaacaaatccgttgacacctagtatcaac 332  Q
    |||||| ||||||||||||||||||||||||||| |||||    
T  14754052 ggatttagtgtcaacaaatccgttgacacctagtgtcaac 14754091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 295 - 345
Target Start/End: Original strand, 3043970 - 3044020
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactca 345  Q
    ||||||||||||| ||| ||||||||||| || || |||||||||||||||    
T  3043970 atttggtgtcaacgaattcgttgacacctggtgtcgacggatcctaactca 3044020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 265 - 339
Target Start/End: Original strand, 17725630 - 17725703
Alignment:
Q  265 cctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    |||||||||||| | |||| ||||| | ||||||||||||||| ||| |||||||||||  | ||||||||||||    
T  17725630 cctttgatcaaa-taaaataaatggataggatttggtgtcaacgaattcgttgacacctgctgtcaacggatcct 17725703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 8373698 - 8373747
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||||||||||| ||||||||||||| | || |||||||||||| ||||    
T  8373698 atttggtgtcaacgaatccgttgacacttggtgtcaacggatcctgactc 8373747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 346
Target Start/End: Complemental strand, 9197144 - 9197091
Alignment:
Q  293 ggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||||||||||| ||| ||||||||||| || ||||||||| || ||||||    
T  9197144 ggatttggtgtcaacgaattcgttgacacctggtgtcaacggattctgactcat 9197091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 11686962 - 11687023
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcatttt 349  Q
    ||||| ||||| |||||||| ||| ||||||||||  || ||||||||||||||||| ||||    
T  11686962 ggttgagatttagtgtcaacgaattcgttgacaccaggtgtcaacggatcctaactcttttt 11687023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 518
Target Start/End: Original strand, 22631587 - 22631620
Alignment:
Q  485 caaacaagtgcctgcacataatcactcctcaatt 518  Q
    |||||||||| |||||||||||||||||||||||    
T  22631587 caaacaagtggctgcacataatcactcctcaatt 22631620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 347
Target Start/End: Complemental strand, 26652341 - 26652288
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcatt 347  Q
    |||||||||| ||| ||| ||||||||||| || |||||||||||| |||||||    
T  26652341 gatttggtgttaacgaattcgttgacacctggtgtcaacggatcctgactcatt 26652288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 346
Target Start/End: Complemental strand, 27441523 - 27441462
Alignment:
Q  285 aatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||  |||||| ||||||| ||| ||||||||||| || ||||||||||||| |||||    
T  27441523 aatggttaagatttgatgtcaacgaattcgttgacacctggtgtcaacggatcctatctcat 27441462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 32414528 - 32414573
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    |||||||||||||| ||||||||||||||| || ||||| ||||||    
T  32414528 gatttggtgtcaacgaatccgttgacacctggtgtcaacagatcct 32414573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 37025061 - 37025005
Alignment:
Q  286 atggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaact 343  Q
    ||||||| |||||||||||||| |||| ||||||| || || ||||||||||||||||    
T  37025061 atggttgagatttggtgtcaacgaatctgttgaca-ctggtgtcaacggatcctaact 37025005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 8372960 - 8372916
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    ||||||||||||| ||||||||||||||  || ||||||||||||    
T  8372960 atttggtgtcaacgaatccgttgacaccaggtgtcaacggatcct 8372916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 9197818 - 9197874
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    |||| ||||||||||||||| ||| ||||||||| | || |||||||||||| ||||    
T  9197818 ggttaggatttggtgtcaacgaattcgttgacacttggtgtcaacggatcctgactc 9197874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 37732872 - 37732824
Alignment:
Q  296 tttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    |||||||||||| ||||||||||||||  || |||||||||||| ||||    
T  37732872 tttggtgtcaacgaatccgttgacaccaggtgtcaacggatcctgactc 37732824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 6e-48; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 202 - 339
Target Start/End: Original strand, 6476703 - 6476840
Alignment:
Q  202 agcgtgattgggtgcagcaagaaagttggaaatttatggagaccatttaatgaaaattatgagcctttgatcaaacttaaatgaatggttgggatttggt 301  Q
    |||||||||  || || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||    
T  6476703 agcgtgattccgtacatcaagaaagttggaaatttatggagaccatttaatgagaattatgagcctttgataaaacttaaatgaatggttgagatttggt 6476802  T
Q  302 gtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    |||||| ||||||||||||||| || ||||||||||||    
T  6476803 gtcaacgaatccgttgacacctggtgtcaacggatcct 6476840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 202 - 338
Target Start/End: Complemental strand, 10554686 - 10554550
Alignment:
Q  202 agcgtgattgggtgcagcaagaaagttggaaatttatggagaccatttaatgaaaattatgagcctttgatcaaacttaaatgaatggttgggatttggt 301  Q
    |||||||||  || || ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||    
T  10554686 agcgtgattccgtacatcaagaaagttggaaatttatggaaaccatttaatgagaattatgagcctttgataaaacttaaatgaatggttgagatttggt 10554587  T
Q  302 gtcaacaaatccgttgacacctagtatcaacggatcc 338  Q
    |||||| ||||||||||||||| || |||||| ||||    
T  10554586 gtcaacgaatccgttgacacctggtgtcaacgaatcc 10554550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 38057598 - 38057646
Alignment:
Q  293 ggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaa 341  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  38057598 ggatttggtgtcaaccaatccgttgacacctagtgtcaacggatcctaa 38057646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 288 - 346
Target Start/End: Complemental strand, 235645 - 235587
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||| |||||||||||||| ||||||||||||||| || |||| ||||||||||||||    
T  235645 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctaactcat 235587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 256 - 338
Target Start/End: Complemental strand, 25858295 - 25858213
Alignment:
Q  256 aattatgagcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcc 338  Q
    ||||| ||||| ||||| ||||| ||||| | | ||  |||||||||||||| |||||||||||||||||| |||||||||||    
T  25858295 aattacgagccattgattaaactgaaatggaagattatgatttggtgtcaacgaatccgttgacacctagtgtcaacggatcc 25858213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 27363762 - 27363807
Alignment:
Q  278 ttaaatgaatggttgggatttggtgtcaacaaatccgttgacacct 323  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||    
T  27363762 ttaaatgaatggttggaatttggtgtcaacgaatccgttgacacct 27363807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 344
Target Start/End: Complemental strand, 4084941 - 4084877
Alignment:
Q  280 aaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||  || |||||||||||| ||||    
T  4084941 aaatgaatggttgagatttggtgtcaacgaattcgttgacaccaggtgtcaacggatcctgactc 4084877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 7632142 - 7632090
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||||||| ||||||||||||||| || ||||||||||||| |||||    
T  7632142 gatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctatctcat 7632090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 19128817 - 19128765
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||||||| ||||||||||||||| || |||||||||||| ||||||    
T  19128817 gatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcat 19128765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 237826 - 237877
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||||||||| ||||||||||||||| || |||||||||||| ||||||    
T  237826 atttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcat 237877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 19359750 - 19359699
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||||||||| ||||||||||||||| || |||||||||||| ||||||    
T  19359750 atttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcat 19359699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 29046081 - 29046026
Alignment:
Q  289 gttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    |||| |||||||||||||| ||||||||||||||| || |||||||||||| ||||    
T  29046081 gttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactc 29046026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 236927 - 236985
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||| ||||||||||| || ||||||||||||||| || |||| ||||||||||||||    
T  236927 ggttgagatttggtgtctacgaatccgttgacacctggtgtcaatggatcctaactcat 236985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 346
Target Start/End: Complemental strand, 17071277 - 17071219
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||| |||||||||||||| ||| |||||||||||  | |||||||||||||||||||    
T  17071277 ggttgagatttggtgtcaacgaattcgttgacacctgatgtcaacggatcctaactcat 17071219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 27364482 - 27364536
Alignment:
Q  285 aatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    |||||||| |||||||||||||| ||||| ||||||||| || ||||||||||||    
T  27364482 aatggttgagatttggtgtcaacgaatccattgacacctggtgtcaacggatcct 27364536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 28705877 - 28705935
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||| ||||| |||||||| ||||||||||||||| || |||||||||||| ||||||    
T  28705877 ggttgagatttagtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcat 28705935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 234747 - 234698
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||||||||||| ||||||||||||||| || |||||||||||| ||||    
T  234747 atttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactc 234698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 1281883 - 1281831
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||||||| ||||||||||||||| || |||| |||||||| |||||    
T  1281883 gatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctatctcat 1281831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 17071792 - 17071848
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||| |||||||||||||| ||| |||| |||||| || |||||||||||||||||    
T  17071792 ggttgcgatttggtgtcaacgaattcgttaacacctggtgtcaacggatcctaactc 17071848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 280 - 344
Target Start/End: Complemental strand, 29087986 - 29087922
Alignment:
Q  280 aaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    |||| ||||| || |||||||||||||  ||||||||||||||| || |||||||||||| ||||    
T  29087986 aaattaatggatgagatttggtgtcaatgaatccgttgacacctggtgtcaacggatcctgactc 29087922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 340
Target Start/End: Original strand, 1554078 - 1554133
Alignment:
Q  285 aatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatccta 340  Q
    |||||||  |||||||||||||| ||| ||||||||||| || |||||||||||||    
T  1554078 aatggttaagatttggtgtcaacgaattcgttgacacctggtgtcaacggatccta 1554133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 19360481 - 19360532
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||||||||| ||| ||||||||||| || |||||||||||| ||||||    
T  19360481 atttggtgtcaacgaattcgttgacacctggtgtcaacggatcctgactcat 19360532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 337
Target Start/End: Complemental strand, 22798948 - 22798905
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatc 337  Q
    |||||||||||||| |||||||||||||||  ||||||||||||    
T  22798948 gatttggtgtcaacgaatccgttgacacctgatatcaacggatc 22798905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 346
Target Start/End: Complemental strand, 28705219 - 28705160
Alignment:
Q  287 tggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||| |||||||||| ||| ||||||||||||||| || ||||||||| || ||||||    
T  28705219 tggttgagatttggtgtaaacgaatccgttgacacctggtgtcaacggatactgactcat 28705160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 343
Target Start/End: Complemental strand, 34600314 - 34600259
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaact 343  Q
    ||||| |||||||||||||| ||| |||||||||||  | ||||||||||||||||    
T  34600314 ggttgagatttggtgtcaacgaattcgttgacacctgatgtcaacggatcctaact 34600259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 38056840 - 38056789
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||||||||| ||||||||||||||| || ||||| ||||||| |||||    
T  38056840 atttggtgtcaaccaatccgttgacacctggtgtcaacagatcctatctcat 38056789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 284 - 322
Target Start/End: Complemental strand, 33470438 - 33470400
Alignment:
Q  284 gaatggttgggatttggtgtcaacaaatccgttgacacc 322  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  33470438 gaatggtttggatttggtgtcaacaaattcgttgacacc 33470400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 1283533 - 1283574
Alignment:
Q  298 tggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    |||||||||| ||||||||||||||| || ||||||||||||    
T  1283533 tggtgtcaacgaatccgttgacacctggtgtcaacggatcct 1283574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 10554565 - 10554524
Alignment:
Q  298 tggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    |||||||||| ||||||||||||||| || ||||||||||||    
T  10554565 tggtgtcaacgaatccgttgacacctggtgtcaacggatcct 10554524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 43510278 - 43510229
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||||||| ||| |||| |||||||||| || |||||||||||||||||    
T  43510278 atttggtgttaacgaatctgttgacacctggtgtcaacggatcctaactc 43510229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 338
Target Start/End: Original strand, 1283504 - 1283548
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcc 338  Q
    |||||||||||||| ||||||||||||||| || |||||| ||||    
T  1283504 gatttggtgtcaacgaatccgttgacacctggtgtcaacgaatcc 1283548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 14478967 - 14478923
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    ||||||||||||| |||||||||||||||  | ||||||||||||    
T  14478967 atttggtgtcaacgaatccgttgacacctgatgtcaacggatcct 14478923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 34600829 - 34600885
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||| |||||||||||||| ||| |||| |||||| || |||| ||||||||||||    
T  34600829 ggttgcgatttggtgtcaacgaattcgttaacacctggtgtcaagggatcctaactc 34600885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 214 - 317
Target Start/End: Complemental strand, 18977136 - 18977033
Alignment:
Q  214 tgcagcaagaaagttggaaatttatggagaccatttaatgaaaattatgagcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatcc 313  Q
    |||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  18977136 tgcatcaagaaagttgaaaatttatggagaccatttaatgagaattatgagcctttgatcaaacttaaatgaatggttgagatttggtgtcaacgaatcc 18977037  T
Q  314 gttg 317  Q
    ||||    
T  18977036 gttg 18977033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 278 - 339
Target Start/End: Complemental strand, 7668545 - 7668484
Alignment:
Q  278 ttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||| || ||||||||||||    
T  7668545 ttaaatgaatggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcct 7668484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 253 - 346
Target Start/End: Original strand, 37950432 - 37950524
Alignment:
Q  253 gaaaattatgagcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||| || ||||||||||||||| | ||||  |||| || |||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  37950432 gaaaaatacgagcctttgatcaaa-taaaattgatggatgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactcat 37950524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 25343358 - 25343298
Alignment:
Q  286 atggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||| |||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  25343358 atggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactcat 25343298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 253 - 344
Target Start/End: Complemental strand, 30660680 - 30660590
Alignment:
Q  253 gaaaattatgagcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||| || ||||||||||||||| | ||||  |||| || |||||||||||||| ||||||||||||||| || |||||||||||||||||    
T  30660680 gaaaaatacgagcctttgatcaaa-taaaattgatggatgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactc 30660590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 286 - 344
Target Start/End: Complemental strand, 25342552 - 25342494
Alignment:
Q  286 atggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||||| |||||||||||||| ||||||||||||||| || |||||||||||||||||    
T  25342552 atggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactc 25342494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 46428242 - 46428182
Alignment:
Q  286 atggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||| |||||||||||||| ||||||||||||||| || |||||||||||| ||||||    
T  46428242 atggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcat 46428182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 25599069 - 25599014
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcatttt 349  Q
    |||||||||||||| ||||||||||||||| || |||||||||||| |||||||||    
T  25599069 gatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcatttt 25599014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 307
Target Start/End: Complemental strand, 42420459 - 42420392
Alignment:
Q  240 gagaccatttaatgaaaattatgagcctttgatcaaacttaaatgaatggttgggatttggtgtcaac 307  Q
    ||||||||| | ||| ||||||||||||||||||||| ||||||||| ||||| ||| ||||||||||    
T  42420459 gagaccattaattgagaattatgagcctttgatcaaatttaaatgaagggttgagatatggtgtcaac 42420392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 3772525 - 3772583
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||| |||||||||||||| ||| ||||||||||| || |||||||||||||||||||    
T  3772525 ggttgagatttggtgtcaacgaatacgttgacacctggtgtcaacggatcctaactcat 3772583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 288 - 346
Target Start/End: Complemental strand, 27948499 - 27948441
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||| |||||||||||||| ||| ||||||||||| || |||||||||||||||||||    
T  27948499 ggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctaactcat 27948441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 30661424 - 30661505
Alignment:
Q  257 attatgagcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    ||||| |||||||||| ||| | |||| || ||||| |||||||||||||| ||||||||||||||| || ||||||||||||    
T  30661424 attataagcctttgattaaa-taaaatcaacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcct 30661505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 257 - 339
Target Start/End: Complemental strand, 37949688 - 37949607
Alignment:
Q  257 attatgagcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    ||||| |||||||||| ||| | |||| || ||||| |||||||||||||| ||||||||||||||| || ||||||||||||    
T  37949688 attataagcctttgattaaa-taaaatcaacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcct 37949607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 3029197 - 3029249
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatccta 340  Q
    |||||||||||||||||||| ||| ||||||||||| || |||||||||||||    
T  3029197 ggttgggatttggtgtcaacgaattcgttgacacctggtgtcaacggatccta 3029249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 14305137 - 14305085
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| |||||    
T  14305137 gatttggtgtcaatgaatccgttgacacctagtgtcaacggatcctatctcat 14305085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 16664122 - 16664182
Alignment:
Q  286 atggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||| ||||| ||||||||  |||||||||||||| || |||||||||||||||||||    
T  16664122 atggttgagatttagtgtcaacggatccgttgacacctggtgtcaacggatcctaactcat 16664182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 17638482 - 17638542
Alignment:
Q  286 atggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||| ||||| ||||||||  |||||||||||||| || |||||||||||||||||||    
T  17638482 atggttgagatttagtgtcaacggatccgttgacacctggtgtcaacggatcctaactcat 17638542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 340
Target Start/End: Original strand, 24389607 - 24389667
Alignment:
Q  280 aaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatccta 340  Q
    |||| |||||||| |||||||||||||  ||||||||||||||| || |||||||||||||    
T  24389607 aaataaatggttgagatttggtgtcaatgaatccgttgacacctggtgtcaacggatccta 24389667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 26636156 - 26636100
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||| |||||||||||||| ||||||||||||||| || |||||||||||| ||||    
T  26636156 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactc 26636100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 285 - 340
Target Start/End: Complemental strand, 14686187 - 14686132
Alignment:
Q  285 aatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatccta 340  Q
    ||||| || |||||||||||||||||||||||||||| | || |||||||||||||    
T  14686187 aatggatgagatttggtgtcaacaaatccgttgacacttggtgtcaacggatccta 14686132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 343
Target Start/End: Complemental strand, 24719396 - 24719333
Alignment:
Q  280 aaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaact 343  Q
    ||||||||| |||  ||||||||||||| |||||||||||| || || ||||||||||||||||    
T  24719396 aaatgaatgattgatatttggtgtcaacgaatccgttgacatctggtgtcaacggatcctaact 24719333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 288 - 339
Target Start/End: Original strand, 26636859 - 26636910
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    ||||| |||||||||||||| ||||||||||||||| || ||||||||||||    
T  26636859 ggttgagatttggtgtcaacgaatccgttgacaccttgtgtcaacggatcct 26636910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 37395505 - 37395556
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||||| ||| ||||||||||||||| || |||||||||||||||||||    
T  37395505 atttggtgttaacgaatccgttgacacctggtgtcaacggatcctaactcat 37395556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 45099899 - 45099950
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||||||||| ||||||||||||||| || |||||||||||| ||||||    
T  45099899 atttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcat 45099950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 347
Target Start/End: Complemental strand, 1417664 - 1417602
Alignment:
Q  285 aatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcatt 347  Q
    |||||||  |||||||||||||| ||| ||||||||||| || ||||||||||||| ||||||    
T  1417664 aatggttaagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcctatctcatt 1417602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 13785598 - 13785643
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    |||||||||||||| ||||||||||||||| || ||||||||||||    
T  13785598 gatttggtgtcaacgaatccgttgacacctggtgtcaacggatcct 13785643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 40273618 - 40273557
Alignment:
Q  283 tgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    |||| ||||| |||||||||||||| ||| | ||||||||| || |||||||||||||||||    
T  40273618 tgaacggttgagatttggtgtcaacgaattcattgacacctggtgtcaacggatcctaactc 40273557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 289 - 346
Target Start/End: Complemental strand, 45162021 - 45161964
Alignment:
Q  289 gttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||| |||||||||||||| |||||||| |||||| || |||| ||||||||||||||    
T  45162021 gttgagatttggtgtcaacgaatccgttaacacctggtgtcaatggatcctaactcat 45161964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 338
Target Start/End: Original strand, 24453731 - 24453775
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcc 338  Q
    |||||||||||||||||||||||||||||| || |||||| ||||    
T  24453731 gatttggtgtcaacaaatccgttgacacctggtgtcaacgaatcc 24453775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 47719709 - 47719761
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||||||| ||||||||||||||| || |||| |||||||| |||||    
T  47719709 gatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctatctcat 47719761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 339
Target Start/End: Original strand, 3903330 - 3903389
Alignment:
Q  280 aaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    ||||||||| |||  |||||||||||||  |||||||||||||| || ||||||||||||    
T  3903330 aaatgaatgattgatatttggtgtcaacggatccgttgacacctggtgtcaacggatcct 3903389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 19067690 - 19067639
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    ||||| |||||||||||||| ||||||||||||| | || ||||||||||||    
T  19067690 ggttgagatttggtgtcaacgaatccgttgacacgtggtgtcaacggatcct 19067639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 340
Target Start/End: Original strand, 38225971 - 38226026
Alignment:
Q  285 aatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatccta 340  Q
    |||||||  |||||||||||||| ||| ||||||||||| || |||||||||||||    
T  38225971 aatggttaagatttggtgtcaacgaattcgttgacacctggtgtcaacggatccta 38226026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 337
Target Start/End: Original strand, 43065121 - 43065164
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatc 337  Q
    |||||||||||||| ||||||||||||||| || ||||||||||    
T  43065121 gatttggtgtcaacgaatccgttgacacctggtgtcaacggatc 43065164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 3219545 - 3219603
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||| ||||| |||||||| ||| |||| ||||||||| | |||||||||||||||||    
T  3219545 ggttgagattttgtgtcaacgaattcgttaacacctagtgttaacggatcctaactcat 3219603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 265 - 339
Target Start/End: Original strand, 19068372 - 19068445
Alignment:
Q  265 cctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    |||||||||||| | |||| || |||||  ||||||||||||| ||| ||||||||||| || ||||||||||||    
T  19068372 cctttgatcaaa-taaaatcaacggttgaaatttggtgtcaacgaatacgttgacacctggtgtcaacggatcct 19068445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 344
Target Start/End: Original strand, 25343236 - 25343294
Alignment:
Q  286 atggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||||| |||||||||||||| ||| | ||||||||| || |||||||||||| ||||    
T  25343236 atggttgagatttggtgtcaacgaattcattgacacctggtgtcaacggatcctgactc 25343294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 31278159 - 31278205
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatccta 340  Q
    |||||||||||||| |||||||||||| || || |||||||||||||    
T  31278159 gatttggtgtcaacgaatccgttgacatctggtgtcaacggatccta 31278205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 487
Target Start/End: Original strand, 7171571 - 7171652
Alignment:
Q  407 cataagattaggtccagaagcttcaagaagcacaatcatcaatggctgc----cattgagatagatattctctatttgtacacaa 487  Q
    ||||| ||||||||||||||||||   || |||||||||||||||||||    ||| |||||| ||||| ||||| |||||||||    
T  7171571 cataaaattaggtccagaagcttc---aaacacaatcatcaatggctgccactcatcgagatatatattttctatatgtacacaa 7171652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 18977766 - 18977819
Alignment:
Q  286 atggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    ||||||| |||||||||| ||| ||||||||||||||| || |||| |||||||    
T  18977766 atggttgagatttggtgttaacgaatccgttgacacctggtgtcaatggatcct 18977819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 42421049 - 42421101
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatccta 340  Q
    ||||| ||||||||||||||||||| ||||||| || || ||||| |||||||    
T  42421049 ggttgagatttggtgtcaacaaatcggttgacatctggtgtcaacagatccta 42421101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 99 - 224
Target Start/End: Original strand, 8496384 - 8496510
Alignment:
Q  99 ataatttgagatcggccaaaagaaactcttgaataaacggtggctgtacatacaggtggtggctgatttcattcctggttttttaggcacaaaattgaaa 198  Q
    ||||||||||||||||||||||||| ||||||||||||||| | |||||||||| || ||||||||||||||   ||||||||||||||| |||||||||    
T  8496384 ataatttgagatcggccaaaagaaattcttgaataaacggttgttgtacatacaagtagtggctgatttcatcgttggttttttaggcactaaattgaaa 8496483  T
Q  199 caaagcgtgatt-gggtgcagcaagaa 224  Q
    || || |||||| ||||||||||||||    
T  8496484 cagagtgtgattggggtgcagcaagaa 8496510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 8496322 - 8496389
Alignment:
Q  14 agaggagcactgagatgatttcattcaaattgagtttcaagccaattactttactggccgtgaataatt 82  Q
    ||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| ||||||||||    
T  8496322 agaggagcactgagatgatttcattcagattgagtttgaagcc-attactttactggctgtgaataatt 8496389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 288 - 346
Target Start/End: Complemental strand, 10171329 - 10171271
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||| |||||||||||||| ||||||||||||||| || |||||||||||| ||||||    
T  10171329 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcat 10171271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 19323735 - 19323816
Alignment:
Q  257 attatgagcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    ||||||||||||| |||||| | ||||  ||||||| |||||||||||||| ||| ||||||||||| || ||||||||||||    
T  19323735 attatgagcctttaatcaaa-taaaatcgatggttgagatttggtgtcaacgaattcgttgacacctggtgtcaacggatcct 19323816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 288 - 346
Target Start/End: Complemental strand, 26528876 - 26528818
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||| |||||||||||||| ||| ||||||||||| || |||||||||||||||||||    
T  26528876 ggttgagatttggtgtcaacgaatgcgttgacacctggtgtcaacggatcctaactcat 26528818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 8488527 - 8488466
Alignment:
Q  283 tgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    |||| ||||| |||||||||||||| ||||||||||||||| || |||| ||||||||||||    
T  8488527 tgaacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctaactc 8488466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 289 - 346
Target Start/End: Complemental strand, 19311053 - 19310996
Alignment:
Q  289 gttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||| ||||||||||||||||||||||| |||||| || |||||||||||| ||||||    
T  19311053 gttgagatttggtgtcaacaaatccgttaacacctggtgtcaacggatcctgactcat 19310996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 10171964 - 10172020
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||| |||||||||||||| ||| ||||||||||| || |||||||||||||||||    
T  10171964 ggttgagatttggtgtcaacgaatgcgttgacacctggtgtcaacggatcctaactc 10172020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 344
Target Start/End: Complemental strand, 19323070 - 19322979
Alignment:
Q  253 gaaaattatgagcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaac-ggatcctaactc 344  Q
    ||||| || ||||||||||||||| | ||||  |||| || |||||||||||||| ||||||||||||||| || ||||| ||||||||||||    
T  19323070 gaaaaatacgagcctttgatcaaa-taaaattgatggatgagatttggtgtcaacgaatccgttgacacctggtgtcaacgggatcctaactc 19322979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 26529511 - 26529567
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||| |||||||||||||| ||||||||||||||| || |||||||||||| ||||    
T  26529511 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactc 26529567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 281 - 346
Target Start/End: Complemental strand, 18227791 - 18227727
Alignment:
Q  281 aatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||| ||||||| |||||||||||||| |||||||||||| || || |||||||||||| ||||||    
T  18227791 aatggatggttgtgatttggtgtcaacgaatccgttgaca-ctggtgtcaacggatcctgactcat 18227727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 33435387 - 33435335
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||||||| |||||||| |||||  || |||||||||||||||||||    
T  33435387 gatttggtgtcaacgaatccgttaacaccaggtgtcaacggatcctaactcat 33435335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 3623745 - 3623803
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||| |||||||||||||| ||| |||| ||| || || |||||||||||||||||||    
T  3623745 ggttgcgatttggtgtcaacgaattcgttaacatctggtgtcaacggatcctaactcat 3623803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 288 - 346
Target Start/End: Complemental strand, 12344947 - 12344889
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||| |||||||| ||||| |||| |||||||||| || |||| ||||||||||||||    
T  12344947 ggttgagatttggtatcaacgaatctgttgacacctggtgtcaatggatcctaactcat 12344889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 19311831 - 19311876
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    |||||||||||||| ||||||||||||||| || |||||| |||||    
T  19311831 gatttggtgtcaacgaatccgttgacacctggtgtcaacgaatcct 19311876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 346
Target Start/End: Complemental strand, 25060872 - 25060811
Alignment:
Q  285 aatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||| || ||||| |||| ||| |||| |||||||||| || |||||||||||||||||||    
T  25060872 aatggatgagattttgtgttaacgaatctgttgacacctggtgtcaacggatcctaactcat 25060811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 33436278 - 33436323
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    |||||||||||||| |||||||||||| || || ||||||||||||    
T  33436278 gatttggtgtcaacgaatccgttgacatctggtgtcaacggatcct 33436323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 3623228 - 3623172
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||| |||||||||||||  ||| |||||||||||  | |||||||||||||||||    
T  3623228 ggttgagatttggtgtcaaagaattcgttgacacctgatgtcaacggatcctaactc 3623172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 21133231 - 21133283
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||||||| ||| |||| |||| | || |||||||||||||||||||    
T  21133231 gatttggtgtcaacgaattcgttaacacatggtgtcaacggatcctaactcat 21133283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 227 - 344
Target Start/End: Complemental strand, 13262947 - 13262830
Alignment:
Q  227 ttggaaatttatggagaccatttaatgaaaattatgagcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagt 326  Q
    |||| ||||| | ||| ||||| | ||| |||||| |||||||||||||||||||||| | ||||| |||||||||||||| ||| ||||||||||| ||    
T  13262947 ttggcaatttctagaggccattaattgagaattataagcctttgatcaaacttaaatggagggttgagatttggtgtcaacgaattcgttgacacctggt 13262848  T
Q  327 atcaacggatcctaactc 344  Q
     |||||||||||||||||    
T  13262847 gtcaacggatcctaactc 13262830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 206 - 309
Target Start/End: Complemental strand, 8548955 - 8548852
Alignment:
Q  206 tgattgggtgcagcaagaaagttggaaatttatggagaccatttaatgaaaattatgagcctttgatcaaacttaaatgaatggttgggatttggtgtca 305  Q
    ||||| ||||||  |||||||||| ||||||||||||||||| |||| | |||||| |||||||||| ||  ||||||||||||||| | ||| ||||||    
T  8548955 tgattcggtgcataaagaaagttgaaaatttatggagaccatgtaataagaattataagcctttgattaactttaaatgaatggttgagttttagtgtca 8548856  T
Q  306 acaa 309  Q
    ||||    
T  8548855 acaa 8548852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 253 - 346
Target Start/End: Complemental strand, 49680898 - 49680806
Alignment:
Q  253 gaaaattatgagcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||| || ||||||||||||||| | ||||  |||| || |||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  49680898 gaaaaatacgagcctttgatcaaa-taaaattgatggatgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctaactcat 49680806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 10120831 - 10120775
Alignment:
Q  293 ggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcatttt 349  Q
    ||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||    
T  10120831 ggatttggtgtcaaccaatccgttgacacctggtgtcaacggatcctaactcatttt 10120775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 30932784 - 30932850
Alignment:
Q  278 ttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||||| || |||||||||||| ||||    
T  30932784 ttaaatgaatggttgagatttggtgccaacgaatccgttgacacctggtgtcaacggatcctcactc 30932850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 262 - 346
Target Start/End: Complemental strand, 8987869 - 8987785
Alignment:
Q  262 gagcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||||||||  ||| || ||||||| |||||||||||||| |||||||||||||||  | ||||| |||||| ||||||    
T  8987869 gagcctttgatcaaatataactgtatggttgagatttggtgtcaacgaatccgttgacacctgatgtcaaccgatcctgactcat 8987785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 10121551 - 10121607
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||| |||||||||||||| ||||||||||||||| || |||||||||||||||||    
T  10121551 ggttgagatttggtgtcaaccaatccgttgacacctggtgtcaacggatcctaactc 10121607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 32038530 - 32038469
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcatttt 349  Q
    ||||| |||||||||||||| ||| ||||||||||| |||||||| ||||||||||| ||||    
T  32038530 ggttgagatttggtgtcaacgaattcgttgacacctggtatcaaccgatcctaactcttttt 32038469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 345
Target Start/End: Original strand, 169623 - 169683
Alignment:
Q  285 aatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactca 345  Q
    |||||||| ||||||||||||| |||| ||||||||||| || ||||||||||||| ||||    
T  169623 aatggttgagatttggtgtcaataaattcgttgacacctggtgtcaacggatcctacctca 169683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 339
Target Start/End: Complemental strand, 11548881 - 11548802
Alignment:
Q  259 tatgagcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    |||||||||||||||||| | |||| |||| ||| ||||| |||||||| |||| |||||||||| || ||||||||||||    
T  11548881 tatgagcctttgatcaaa-taaaataaatgattgagatttagtgtcaacgaatctgttgacacctggtgtcaacggatcct 11548802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 285 - 340
Target Start/End: Complemental strand, 7558505 - 7558450
Alignment:
Q  285 aatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatccta 340  Q
    ||||| || |||||||||||||||||||||||||||| | || |||||||||||||    
T  7558505 aatggatgagatttggtgtcaacaaatccgttgacacttggtgtcaacggatccta 7558450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 30663970 - 30664033
Alignment:
Q  283 tgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||| ||||| |||||||||||||| ||||||||||||||  || |||||||||||| ||||||    
T  30663970 tgaacggttgagatttggtgtcaacgaatccgttgacaccaggtgtcaacggatcctgactcat 30664033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 288 - 339
Target Start/End: Original strand, 34309229 - 34309280
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    ||||| |||||||||||||| ||||||||||||||| || ||||||||||||    
T  34309229 ggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacggatcct 34309280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 4433852 - 4433898
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatccta 340  Q
    |||||||||||||| ||||||||||||||| || |||||||||||||    
T  4433852 gatttggtgtcaacgaatccgttgacacctggtgtcaacggatccta 4433898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 338
Target Start/End: Complemental strand, 19171863 - 19171781
Alignment:
Q  256 aattatgagcctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcc 338  Q
    ||||| ||||| ||||| ||||| ||||| | |||| ||||||||||||||| ||||||||||||| |  | |||||||||||    
T  19171863 aattacgagccattgattaaactgaaatggaaggttaggatttggtgtcaacgaatccgttgacacttgatgtcaacggatcc 19171781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 344
Target Start/End: Original strand, 25469091 - 25469141
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    |||||||||||||| ||||||||||||||| || |||||||||||| ||||    
T  25469091 gatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactc 25469141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 349
Target Start/End: Complemental strand, 30663416 - 30663350
Alignment:
Q  283 tgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcatttt 349  Q
    |||| ||||| |||||||||||||| |||||||||| |||| || |||||||||||| |||| ||||    
T  30663416 tgaacggttgagatttggtgtcaacgaatccgttgatacctggtgtcaacggatcctgactcttttt 30663350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 285 - 346
Target Start/End: Original strand, 11704804 - 11704865
Alignment:
Q  285 aatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||| || |||||||||||||| ||||||||||||| | || |||| ||||||||||||||    
T  11704804 aatggatgagatttggtgtcaacgaatccgttgacacttggtgtcaatggatcctaactcat 11704865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 293 - 346
Target Start/End: Original strand, 19172579 - 19172632
Alignment:
Q  293 ggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||||||||||| ||||||||||||||| || |||| ||||||| ||||||    
T  19172579 ggatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctgactcat 19172632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 293 - 346
Target Start/End: Original strand, 36390371 - 36390424
Alignment:
Q  293 ggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||||||||  || ||||||||||| || |||||||||||||||||||    
T  36390371 ggatttggtgtcaacggattcgttgacacctggtgtcaacggatcctaactcat 36390424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 37577651 - 37577696
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatccta 340  Q
    ||||||||||||| ||||||||||||||| ||||||| ||||||||    
T  37577651 atttggtgtcaacgaatccgttgacacctggtatcaatggatccta 37577696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 13263515 - 13263571
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||| |||||||||||||| ||||| ||||||||| || |||||||||||| ||||    
T  13263515 ggttgagatttggtgtcaacgaatccattgacacctggtgtcaacggatcctgactc 13263571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 17172667 - 17172719
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||| |||||| ||||||||||||||| || ||||||||||||| |||||    
T  17172667 gatttggcgtcaacgaatccgttgacacctggtgtcaacggatcctatctcat 17172719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 24992017 - 24991965
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||||||| ||||||||||||||| || |||| |||||||| |||||    
T  24992017 gatttggtgtcaacgaatccgttgacacctggtgtcaatggatcctatctcat 24991965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 25733169 - 25733237
Alignment:
Q  278 ttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||||||||||| |||||| ||| ||| |||||||||| ||||  | |||||||||| ||||||||    
T  25733169 ttaaatgaatggttgagatttgatgttaacgaatccgttgatacctgatgtcaacggatcttaactcat 25733237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 43252530 - 43252479
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||||||||||||||||||||||| || ||||||||| ||| |||||    
T  43252530 gatttggtgtcaacaaatccgttgacacct-gtgtcaacggattctatctcat 43252479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 13142673 - 13142724
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||| |||||||| ||||||||||||||| || |||| ||||||||||||||    
T  13142673 atttagtgtcaacgaatccgttgacacctggtgtcaagggatcctaactcat 13142724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 4439211 - 4439257
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatccta 340  Q
    |||||||||||||| ||||||||||||||  || |||||||||||||    
T  4439211 gatttggtgtcaacgaatccgttgacaccaggtgtcaacggatccta 4439257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 288 - 346
Target Start/End: Complemental strand, 7406298 - 7406240
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||| |||||||||||||| ||| |||| |||||| || |||||||||||| ||||||    
T  7406298 ggttgagatttggtgtcaacgaattcgttaacacctggtgtcaacggatcctgactcat 7406240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 7559195 - 7559249
Alignment:
Q  285 aatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    ||||| || ||||||||||||||  |||||||||||||| || ||||||||||||    
T  7559195 aatggatgagatttggtgtcaacggatccgttgacacctggtgtcaacggatcct 7559249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 288 - 346
Target Start/End: Complemental strand, 25468563 - 25468505
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||| |||||||||||||  ||||||||||||||| || |||| ||||||| ||||||    
T  25468563 ggttgagatttggtgtcaatgaatccgttgacacctggtgtcaatggatcctgactcat 25468505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 265 - 339
Target Start/End: Original strand, 27256689 - 27256762
Alignment:
Q  265 cctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    |||||||||||| | |||| || |||||  ||||||||||||| ||| ||||||||||| || ||||||||||||    
T  27256689 cctttgatcaaa-taaaatcaacggttgaaatttggtgtcaacgaatacgttgacacctggtgtcaacggatcct 27256762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 265 - 339
Target Start/End: Complemental strand, 34308548 - 34308475
Alignment:
Q  265 cctttgatcaaacttaaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    |||||||||||| | |||| || |||||  ||||||||||||| ||| ||||||||||| || ||||||||||||    
T  34308548 cctttgatcaaa-taaaatcaacggttgaaatttggtgtcaacgaatacgttgacacctggtgtcaacggatcct 34308475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 288 - 346
Target Start/End: Complemental strand, 37576977 - 37576919
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||| ||||||||||||||| ||||| ||||||||  |||||||||||| ||| |||||    
T  37576977 ggttaggatttggtgtcaacgaatccattgacaccgggtatcaacggattctatctcat 37576919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 17171977 - 17171932
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatccta 340  Q
    ||||||||||||| ||| ||||||||||| || |||||||||||||    
T  17171977 atttggtgtcaacgaattcgttgacacctggtgtcaacggatccta 17171932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 26118716 - 26118675
Alignment:
Q  298 tggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    ||||||||||||||||||||||| || || ||||||||||||    
T  26118716 tggtgtcaacaaatccgttgacatctggtgtcaacggatcct 26118675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 36389822 - 36389777
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    |||||||||||| ||||||||||||||||  || ||||||||||||    
T  36389822 gatttggtgtcagcaaatccgttgacaccaggtgtcaacggatcct 36389777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 45818067 - 45818018
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||||||||||  ||||||||||||||| || |||||||||| ||||||    
T  45818067 atttggtgtcaatgaatccgttgacacctggtgtcaacggatcttaactc 45818018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 47967909 - 47967864
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    |||||||||||||| ||||||||||||||| || |||| |||||||    
T  47967909 gatttggtgtcaacgaatccgttgacacctggtgtcaatggatcct 47967864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 168943 - 168891
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatccta 340  Q
    ||||| |||||||||||||  |||||| |||||||| || |||||||||||||    
T  168943 ggttgagatttggtgtcaatgaatccgctgacacctggtgtcaacggatccta 168891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 8988547 - 8988603
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    ||||| |||||||||||||  ||||||||||||||| || ||| |||||| ||||||    
T  8988547 ggttgagatttggtgtcaaggaatccgttgacacctggtgtcagcggatcttaactc 8988603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 280 - 344
Target Start/End: Complemental strand, 25671231 - 25671167
Alignment:
Q  280 aaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    |||| ||||||| ||||||||||| ||| |||||||| |||||  || |||||||||||| ||||    
T  25671231 aaatcaatggttaggatttggtgttaacgaatccgttaacaccaggtgtcaacggatcctgactc 25671167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 28182077 - 28182129
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||||||  ||||||||||||||| || ||||| |||||| ||||||    
T  28182077 gatttggtgtcaaagaatccgttgacacctggtgtcaacagatcctcactcat 28182129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 46391872 - 46391916
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    ||||| ||||||| ||||||||||||||| || ||||||||||||    
T  46391872 atttgatgtcaacgaatccgttgacacctggtgtcaacggatcct 46391916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 46909352 - 46909412
Alignment:
Q  279 taaatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    |||||| ||||||| |||||||||||||  |||| ||||||| || || ||||||||||||    
T  46909352 taaatggatggttgtgatttggtgtcaatgaatctgttgacatctggtgtcaacggatcct 46909412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 281 - 346
Target Start/End: Complemental strand, 26652 - 26587
Alignment:
Q  281 aatgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||| ||||||| |||||||||||||| ||||||||||||||| || |||||||||||| ||||||    
T  26652 aatggatggttgtgatttggtgtcaacgaatccgttgacacctggtgtcaacggatcctgactcat 26587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 5385 - 5436
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||||||||||||||||||||||||| || |||||||||||| ||||||    
T  5385 atttggtgtcaacaaatccgttgacacctggtgtcaacggatcctgactcat 5436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 283 - 344
Target Start/End: Original strand, 23722 - 23783
Alignment:
Q  283 tgaatggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactc 344  Q
    |||| ||||| |||||||||||||| |||||||||||| || || |||| ||||||||||||    
T  23722 tgaacggttgagatttggtgtcaacgaatccgttgacaactggtgtcaatggatcctaactc 23783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 22076 - 22120
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||    
T  22076 atttggtgtcaacgaatccgttgacacctggtgtcaacggatcct 22120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 339
Target Start/End: Complemental strand, 1640 - 1589
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcct 339  Q
    |||||||||||||||||||| ||| ||||||||||| || ||||| ||||||    
T  1640 ggttgggatttggtgtcaacgaattcgttgacacctggtgtcaaccgatcct 1589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 39942 - 39891
Alignment:
Q  295 atttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||||||||||| ||||||||||||||| || ||||||||| || ||||||    
T  39942 atttggtgtcaacgaatccgttgacacctggtgtcaacggattctgactcat 39891  T

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Target: scaffold0086 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 8290 - 8348
Alignment:
Q  288 ggttgggatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    ||||| |||||||||| ||| ||| ||||||||||| || |||| ||||||||||||||    
T  8290 ggttgagatttggtgttaacgaatacgttgacacctggtgtcaatggatcctaactcat 8348  T

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Target: scaffold2007 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold2007
Description:

Target: scaffold2007; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 798 - 746
Alignment:
Q  294 gatttggtgtcaacaaatccgttgacacctagtatcaacggatcctaactcat 346  Q
    |||||||||||||| |||||||||| |||| || |||| ||||||| ||||||    
T  798 gatttggtgtcaacgaatccgttgaaacctggtgtcaatggatcctgactcat 746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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