View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19400_low_10 (Length: 383)
Name: NF19400_low_10
Description: NF19400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19400_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 7 - 368
Target Start/End: Complemental strand, 49210156 - 49209795
Alignment:
| Q |
7 |
tgagatgaaagttagaaaagtatgagataagagagtagtgtgagaaatataattcatttatgtaatttctaaaactctttttaacatattcctcattttc |
106 |
Q |
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| T |
49210156 |
tgagatgaaagttagaaaagtatgagataagagagtagtgtgcgaaatataattcatttatgtaatttctaaaactctttttaacatattcctcattttc |
49210057 |
T |
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| Q |
107 |
ttttcaaaaatctcaaatcaccattgttaaagctttattttatgagcnnnnnnngcccaacaaagaagnnnnnnnnggaagccgttagctccaaatttaa |
206 |
Q |
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| T |
49210056 |
ttttcacaaatctcaaatcaccattgttaaagctttattttatgagcaaaaaaagcccaacaaagaagttttttttggaagccattagctccaaatttaa |
49209957 |
T |
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| Q |
207 |
tgaaactgattttcttgagagcacttttcaaatggcatttttaatggtatacatcacattccaaggttagtgtatgtgcatgagttacatacttaatgga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49209956 |
tgaaactgattttcttgagagcacttttcaaatggcatttttaatggtatacatcacattccaaggttagtgtatgtgcatgagttacatgcttaatgga |
49209857 |
T |
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| Q |
307 |
aaaataaatgatagtcttccacgacattatacactcatgaaagattcaaaatgcatgagttt |
368 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49209856 |
aaaataaatgagagtcttccacgacattatacactcatgaaagattcaaaatgcatgagttt |
49209795 |
T |
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