View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19400_low_16 (Length: 346)
Name: NF19400_low_16
Description: NF19400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19400_low_16 |
 | |
|
| [»] scaffold0041 (2 HSPs) |
| | |
|
| [»] scaffold0111 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 7 - 326
Target Start/End: Original strand, 28975695 - 28976018
Alignment:
| Q |
7 |
gaagcatagggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctgttcataaattggctgagtattaggaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||| |
|
|
| T |
28975695 |
gaagcatagggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctattcataaattggctgagtaatacgaa |
28975794 |
T |
|
| Q |
107 |
tnnnnnnnnnnnn----tctcaccctagattgtaggttgtggtatattgtcgttggtagctttgacgtgcgatgcaacaagtgcttgtgcaaaggaccgc |
202 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
28975795 |
tagagagagagagagagtctcaccacggattgtaggttgtggtatattgtcgttggtagctttgccatgcgatgcaacaagtgcttgtgcaaaggaccgc |
28975894 |
T |
|
| Q |
203 |
ggcggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttggaggatgcagctgccggcaataataactctgcct |
302 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28975895 |
ggtggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttggaggatgcagctgccggcaataacaactctgcct |
28975994 |
T |
|
| Q |
303 |
gctagtcgaacggcatagcagaaa |
326 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
28975995 |
gctagtcgaacggcatagcagaaa |
28976018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 29041472 - 29041402
Alignment:
| Q |
16 |
ggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctgttcata |
86 |
Q |
| |
|
||||| |||| ||||||||||||||| |||||||| || ||||||||||||||||||||||||| |||||| |
|
|
| T |
29041472 |
ggtttgtctcatttgttgagaaccaatcttccacggagatttctcttacacacattgacccccttttcata |
29041402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 319
Target Start/End: Complemental strand, 29041323 - 29041173
Alignment:
| Q |
169 |
gtgcgatgcaacaagtgcttgtgcaaaggaccgcggcggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttg |
268 |
Q |
| |
|
||||||||| || || |||| |||||||| ||| | ||||||| ||||||| |||||||| || || | ||| |||||||||||||||||| ||||| |
|
|
| T |
29041323 |
gtgcgatgccaccagagctttagcaaaggaacgcagttgtggttgaggtgctgaaaccgccgctgctgaagtcagagccatgggagatggtgcaactttg |
29041224 |
T |
|
| Q |
269 |
gaggatgcagctgccggcaataataactctgcctgctagtcgaacggcata |
319 |
Q |
| |
|
|| | | |||||||||||| | ||| || ||||| ||||||| |||||| |
|
|
| T |
29041223 |
gatggtatagctgccggcaaggagaacactacctgccagtcgaaaggcata |
29041173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 5e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 10 - 326
Target Start/End: Original strand, 33066548 - 33066859
Alignment:
| Q |
10 |
gcatagggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctgttcataaattggctgagtattaggaatnn |
109 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| || |||| |
|
|
| T |
33066548 |
gcatagggtttatgtcctttgtttagaaccaaccttccacgaatgtttctcttacacacattgacccc-tgttcataaattggctgagtaatacgaatag |
33066646 |
T |
|
| Q |
110 |
nnnnnnnnnntctcaccctagattgtaggttgtggtatattgtcgttggtagctttgacgtgcgatgcaacaagtgcttgtgcaaaggaccgcggcggtg |
209 |
Q |
| |
|
|||| || |||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33066647 |
agagag----tctccccacagattgtaggttgtggcatattgtcattggtagctttgtcgtgcgatgcaacaagtgcttgtgcaaaggaccgcggcggtg |
33066742 |
T |
|
| Q |
210 |
gttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttggaggatgcagctgccggcaataataactctgcctgctagtc |
309 |
Q |
| |
|
||||||||| |||||||||||||||||| || |||||||| || ||| ||||||||||||| |||||||| ||||||||| |||||||||||| |||| |
|
|
| T |
33066743 |
gttgtggtgatggaaccgccgttgtggagggttgtgccatgagaaatgacgcagctttggagggtgcagctgtcggcaataacaactctgcctgccagtc |
33066842 |
T |
|
| Q |
310 |
gaacggcatagcagaaa |
326 |
Q |
| |
|
||||| ||||| ||||| |
|
|
| T |
33066843 |
gaacgacatagtagaaa |
33066859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 21493508 - 21493582
Alignment:
| Q |
25 |
cctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctgttcataaattggctgagta |
99 |
Q |
| |
|
||||||||||| |||| ||| |||||||||||||||||||| | |||||||||| ||| || | |||||||||| |
|
|
| T |
21493508 |
cctttgttgaggaccagcctcccacgaaggtttctcttacaaaagttgacccccttttcgtacaatggctgagta |
21493582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 327
Target Start/End: Original strand, 21493648 - 21493806
Alignment:
| Q |
169 |
gtgcgatgcaacaagtgcttgtgcaaaggaccgcggcggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttg |
268 |
Q |
| |
|
||||||||| || || ||||||||||||||| ||| |||| |||| ||||||| ||| | || || || | ||||||||||||||| | || || |
|
|
| T |
21493648 |
gtgcgatgccaccagagcttgtgcaaaggacttcggtggtgcctgtgctgctggagtcgcagctggtgaagggattgccatgggagatggcgttgccatg |
21493747 |
T |
|
| Q |
269 |
gaggatgcagctgccggcaataataactctgcctgctagtcgaacggcatagcagaaaa |
327 |
Q |
| |
|
| | |||||||| ||||||| | |||||||||||| ||||||||||||| |||||||| |
|
|
| T |
21493748 |
ggtgttgcagctgtcggcaatgaaaactctgcctgccagtcgaacggcatggcagaaaa |
21493806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 10 - 333
Target Start/End: Original strand, 10304579 - 10304901
Alignment:
| Q |
10 |
gcatagggtttatctccttt--gttgagaaccaaccttccacgaaggtttctcttacacacattgaccccc-tgttcataaattggctgagtattaggaa |
106 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || ||| |
|
|
| T |
10304579 |
gcatagggtttatctcctttttgtttagaaccaaccttccacgaaggtttctcttacacacattgacccctgtgttcataaattggccgagtaatacgaa |
10304678 |
T |
|
| Q |
107 |
tnnnnnnnnnnnntctcaccctagattgtaggttgtggtatattgtcgttggtagctttgacgtgcgatgcaacaagtgcttgtgcaaaggaccgcggcg |
206 |
Q |
| |
|
| ||||||| ||||||||||||||| | |||| ||| |||||||||| |||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
10304679 |
tagagagag----tctcaccacggattgtaggttgtggcagattgccgtaggtagctttgccgtgcgatgcgacaagtgcttgtgcaaaggaccgcgacg |
10304774 |
T |
|
| Q |
207 |
gtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttggaggatgcagctgccggcaataataactctgcctgcta |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||| ||||||||| |||||||||||| | |
|
|
| T |
10304775 |
gtggttgtggtgctggaaccgccgttgtggagggcagtgccatgagagatggtgcagctttggagggcgcagctgtcggcaataacaactctgcctgcca |
10304874 |
T |
|
| Q |
307 |
gtcgaacggcatagcagaaaatcttga |
333 |
Q |
| |
|
||||||||| ||||||||| |||||| |
|
|
| T |
10304875 |
atcgaacggcctagcagaaagtcttga |
10304901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 168 - 333
Target Start/End: Original strand, 10289007 - 10289172
Alignment:
| Q |
168 |
cgtgcgatgcaacaagtgcttgtgcaaaggaccgcggcggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagcttt |
267 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
10289007 |
cgtgcgatgcgacaagtgcttgtgcaagggaccgcggcggcggttgtggtgctggaaccgccgttgtggagggcagtgccatgagagatggtgcagcttt |
10289106 |
T |
|
| Q |
268 |
ggaggatgcagctgccggcaataataactctgcctgctagtcgaacggcatagcagaaaatcttga |
333 |
Q |
| |
|
||||| ||| ||| ||||||||| |||||||||||| | ||||||||| ||||||||| |||||| |
|
|
| T |
10289107 |
ggagggcgcaactgtcggcaataacaactctgcctgccaatcgaacggcttagcagaaagtcttga |
10289172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 10288865 - 10288956
Alignment:
| Q |
10 |
gcatagggtttatctccttt--gttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctgttcataaattggctgagta |
99 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10288865 |
gcatagggtttatctcctttttgtttagaaccaaccttccacaaaggtttctcttacacacattgaccccctgttcataaattggctgagta |
10288956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 20950664 - 20950591
Alignment:
| Q |
13 |
tagggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctgttcata |
86 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| |||||| |
|
|
| T |
20950664 |
tagggtttgtctcctttgttgagaaccaatcttccacggatatttctcttacacacattgacccccttttcata |
20950591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 326
Target Start/End: Complemental strand, 20950512 - 20950355
Alignment:
| Q |
169 |
gtgcgatgcaacaagtgcttgtgcaaaggaccgcggcggtggttgtggtgctggaaccgccgttg-tggacggcagtgccatgggagatggtgcagcttt |
267 |
Q |
| |
|
||||||||| || || ||||| |||||||| |||||| ||||||| ||||||| |||||||| || |||| | || |||||||||||| | |||||||| |
|
|
| T |
20950512 |
gtgcgatgccaccagagcttgagcaaaggaacgcggctgtggttgaggtgctgaaaccgccgctgctgga-gtcaaagccatgggagattgcgcagcttt |
20950414 |
T |
|
| Q |
268 |
ggaggatgcagctgccggcaataataactctgcctgctagtcgaacggcatagcagaaa |
326 |
Q |
| |
|
||| | || |||||| ||||| | | |||||||||| | ||||| ||||||||||||| |
|
|
| T |
20950413 |
ggatggtgtagctgctggcaaggagagctctgcctgccattcgaaaggcatagcagaaa |
20950355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 24 - 303
Target Start/End: Complemental strand, 9282988 - 9282713
Alignment:
| Q |
24 |
tcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctgttcataaattggctgagtattaggaatnnnnnnnnnnnntctc |
123 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||| | || ||||| | || |||| ||| |
|
|
| T |
9282988 |
tcctttgttaagaaccaaccttccacaaaggtttctcttacacacattgaccccctgttaatacactgactgagcagtacgaatggagagagc----ctc |
9282893 |
T |
|
| Q |
124 |
accctagattgtaggttgtggtatattgtcgttggtagctttgacgtgcgatgcaacaagtgcttgtgcaaaggaccgcggcggtggttgtggtgctgga |
223 |
Q |
| |
|
|| | |||||||||| || | ||| || || || |||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9282892 |
acaacgggttgtaggttgcggcagattatcattagtggcttggctgtgcgatgcaacaagtgcttgtgcaaaggaccgcggtggtggttgtggtgctggg |
9282793 |
T |
|
| Q |
224 |
accgccgttgtggacggcagtgccatgggagatggtgcagctttggaggatgcagctgccggcaataataactctgcctg |
303 |
Q |
| |
|
||||| | |||||| | |||||||||||||||||| || ||||||||| || ||||| ||||||||| ||||||||||| |
|
|
| T |
9282792 |
accgcagctgtggaagacagtgccatgggagatggcacaactttggagggtgtagctgtcggcaataacaactctgcctg |
9282713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 38501580 - 38501666
Alignment:
| Q |
13 |
tagggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctgttcataaattggctgagta |
99 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||| || ||||||||||||||||||||||||| |||||| | ||| |||||| |
|
|
| T |
38501580 |
tagggtttgtctcctttgttgagaaccaatcttccacagagatttctcttacacacattgacccccttttcatacactggttgagta |
38501666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 38501748 - 38501888
Alignment:
| Q |
185 |
gcttgtgcaaaggaccgcggcggtggttgtggtgctggaaccgccgttgtggacggcagtgccatgggagatggtgcagctttggaggatgcagctgccg |
284 |
Q |
| |
|
||||| |||||||| |||||| ||||||| ||||||| || ||||| || || | ||| |||||||||||||| || |||||||| | || |||||||| |
|
|
| T |
38501748 |
gcttgagcaaaggaacgcggctgtggttgaggtgctgaaatcgccgctgctgaagtcagagccatgggagatggcgctgctttggatggtgtagctgccg |
38501847 |
T |
|
| Q |
285 |
gcaataataactctgcctgctagtcgaacggcatagcagaa |
325 |
Q |
| |
|
|||| | | |||||||||| ||||||| |||||||||||| |
|
|
| T |
38501848 |
gcaaagagagctctgcctgccagtcgaaaggcatagcagaa |
38501888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 5107 - 5193
Alignment:
| Q |
13 |
tagggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctgttcataaattggctgagta |
99 |
Q |
| |
|
|||||||| ||||||||||||| |||||| |||||||| || ||||||||||||||| ||||||||| |||||| | ||||||||| |
|
|
| T |
5107 |
tagggtttgtctcctttgttgacaaccaatcttccacggagatttctcttacacacactgacccccttttcatacaccggctgagta |
5193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 326
Target Start/End: Original strand, 5332 - 5413
Alignment:
| Q |
245 |
gccatgggagatggtgcagctttggaggatgcagctgccggcaataataactctgcctgctagtcgaacggcatagcagaaa |
326 |
Q |
| |
|
|||||||||||||| ||| ||||||| | || |||||||||||| | | |||||| ||| ||||||| ||||||||||||| |
|
|
| T |
5332 |
gccatgggagatggcgcaactttggatggtgtagctgccggcaaagagagctctgcttgccagtcgaaaggcatagcagaaa |
5413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0111 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 46945 - 47022
Alignment:
| Q |
22 |
tctcctttgttgagaaccaaccttccacgaaggtttctcttacacacattgaccccctgttcataaattggctgagta |
99 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||| ||||||| | |||||||||| |||||| | |||||||||| |
|
|
| T |
46945 |
tctcctttgctgaggaccaaccttccacgaaggtttatcttacagaagttgacccccttttcatacaatggctgagta |
47022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 13582017 - 13582066
Alignment:
| Q |
16 |
ggtttatctcctttgttgagaaccaaccttccacgaaggtttctcttaca |
65 |
Q |
| |
|
||||||||||||||||| || || |||||||| ||||||||||||||||| |
|
|
| T |
13582017 |
ggtttatctcctttgttaagtacaaaccttcctcgaaggtttctcttaca |
13582066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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