View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19400_low_17 (Length: 342)
Name: NF19400_low_17
Description: NF19400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19400_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 43283093 - 43282898
Alignment:
| Q |
1 |
caccagcctatacaatgtgtagtaaagttctatatcaaagctctgttgtgttttggggttctccacctcctcgtcctcctttccgaacgagctagctagg |
100 |
Q |
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| T |
43283093 |
caccagcctatacaatgtgtagtaaagttctatatcaaagctctgttgtgttttggggttctccacctcctcgtcctcctttccgaacgagctagctagg |
43282994 |
T |
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| Q |
101 |
aagcttgttaatcatgtttaatctcaattactgacttgtacttgtgcagtatgttctactacctctgacttgtaagaatatatagcaaggttaaga |
196 |
Q |
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| T |
43282993 |
aagcttgttaatcatgtttaatctcaattactgacttgtacttgtgcagtatgttctactacctctgacttgtaagaatatatagcaaggttaaga |
43282898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 223 - 328
Target Start/End: Complemental strand, 43282871 - 43282766
Alignment:
| Q |
223 |
cttctaaaacccccaatagaatcttctaattttattaatcatctttagataattttttactagtatgtttgtatgtttctctttatctgtctatctaatt |
322 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43282871 |
cttctaaaacccccaatagaatcttctaatgttattaatcatctttagataattttttactagttagtttgtatgtttctctttatctgtctatctaatt |
43282772 |
T |
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| Q |
323 |
atatat |
328 |
Q |
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|||||| |
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| T |
43282771 |
atatat |
43282766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 30678800 - 30678767
Alignment:
| Q |
47 |
tgtgttttggggttctccacctcctcgtcctcct |
80 |
Q |
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| T |
30678800 |
tgtgttttggggtcctccacctcctcgtcctcct |
30678767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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