View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19400_low_19 (Length: 291)
Name: NF19400_low_19
Description: NF19400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19400_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 8158411 - 8158241
Alignment:
| Q |
16 |
acaacgttccatggatctgctcctccctgatcaagatcgtggataaatataagccttggaagttgaaatcttgtcatttgttgatcaatagtaatggatt |
115 |
Q |
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| T |
8158411 |
acaacgttccatggatctgctcctccctgatcaagatcgtggataaatataagccttggaagttgaaatcttgtcatttgttgatcaatagtaatggatt |
8158312 |
T |
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| Q |
116 |
cggttttaacaccatctcgacaagaaagaacaagaattgcactgtcataaatacgcgaagctagttgaaaa |
186 |
Q |
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| T |
8158311 |
cggttttaacaccatctcgacaagaaagaacaagaattgcactgtcataaatacgcgaagctagttgaaaa |
8158241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 279
Target Start/End: Original strand, 44317605 - 44317874
Alignment:
| Q |
16 |
acaacgttccatggatctgctcctccctgatcaagatcgtggataaatataagccttggaagttgaaatcttgtcatttgttgatcaatagtaatggatt |
115 |
Q |
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|||| ||||||| ||||||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44317605 |
acaatgttccatagatctgctccttcctcataaagatcgtcaataaatataagccttggaagttgaaatcttgtcatttgttgatcaatagtaatggatt |
44317704 |
T |
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| Q |
116 |
cggttttaacaccatctcgacaagaaagaacaagaattgcactgtcataaatacgcgaagctagttgaaaatc---------atcaacatgaccagaaga |
206 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||| ||| |||||||||| ||||||| |
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| T |
44317705 |
cggttctaacaccattaacacaagaaagaacaagaattgcactgtcaaaaatacgagaagctagttgaacatcaacattgaaatcaacatgatcagaaga |
44317804 |
T |
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| Q |
207 |
tatcttctccaaaaaattatcatcacnnnnnnnnntgtcaaatagggttatgtttttataggaactgacatat |
279 |
Q |
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| T |
44317805 |
tatcttctccaaaaaagcatcaccac---aatatatgtcaaatagggttatgtttttagaggaagtgacatat |
44317874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 161
Target Start/End: Original strand, 44302256 - 44302357
Alignment:
| Q |
60 |
aaatataagccttggaagttgaaatcttgtcatttgttgatcaatagtaatggattcggttttaacaccatctcgacaagaaagaacaagaattgcactg |
159 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44302256 |
aaatataagccttggaaattgaaatcttgtcatttgttgataaatagcaatggattcatttttaacacaatctcgacaagaaagaacaagaattgcactg |
44302355 |
T |
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| Q |
160 |
tc |
161 |
Q |
| |
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|| |
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| T |
44302356 |
tc |
44302357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 44307440 - 44307580
Alignment:
| Q |
21 |
gttccatggatctgctcctccctgatcaagatcgtggataaatataagccttggaagttgaaatcttgtcatttgttgatcaatagtaatggattcggtt |
120 |
Q |
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||||||||||||||||||| || | |||| ||||| |||||||||| | |||||| |||||||||||||||||||||| ||| | ||||| ||| || |
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| T |
44307440 |
gttccatggatctgctccttccagctcaatatcgtctataaatataaacattggaaattgaaatcttgtcatttgttgaaaaatggcaatggtttcaatt |
44307539 |
T |
|
| Q |
121 |
ttaacaccatctcgacaagaaagaacaagaattgcactgtc |
161 |
Q |
| |
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|||||||||| |||||||||||||| ||| ||||||||| |
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| T |
44307540 |
ttaacaccataaagacaagaaagaacaggaactgcactgtc |
44307580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 43897019 - 43897064
Alignment:
| Q |
57 |
gataaatataagccttggaagttgaaatcttgtcatttgttgatca |
102 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43897019 |
gataaatataagccttggaaattgaaatcttgtcatttgttgatca |
43897064 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 21 - 279
Target Start/End: Original strand, 4085077 - 4085341
Alignment:
| Q |
21 |
gttccatggatctgctcctccctgatcaagatcgtggataaatataagccttggaagttgaaatcttgtcatttgttgatcaatagtaatggattcggtt |
120 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4085077 |
gttccatagatctgctcctttctgatcaagatcgtcaataaatataagccttggaagttgaaatcttgtcatttgttgatcaataataatggattcggtc |
4085176 |
T |
|
| Q |
121 |
ttaacaccatctcgacaagaaagaacaagaattgcactgtcataaatacgcgaagctagttgaaaatc---------atcaacatgaccagaagatatct |
211 |
Q |
| |
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||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||| ||| |||||||||| |||| ||||||| |
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| T |
4085177 |
ttaacaccatcaagacaagaaagaacaataattgcactgtcgaaaatacgcgaagctagttgaacatcaacgttgaaatcaacatgatcagatgatatct |
4085276 |
T |
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| Q |
212 |
tctccaaaaaattatcatcacnnnnnnnnntgtcaaatagggttatgtttttataggaactgacatat |
279 |
Q |
| |
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||||||||||| | | ||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
4085277 |
tctccaaaaaagt---aacacaataagatatgtcaaatagggttatgtttttataggaagtgacatat |
4085341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 18702562 - 18702783
Alignment:
| Q |
16 |
acaacgttccatggatctgctcctccctgatcaagatcgtggataaatataagccttggaagttgaaatcttgtcatttgttgatcaatagtaatggatt |
115 |
Q |
| |
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|||| ||||||| ||||||||||| |||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
18702562 |
acaatgttccatagatctgctccttcctgatacagatcgtcaataaatataagcctaggaagttgaaatcttgtcatttgttgatccatagtaatggatt |
18702661 |
T |
|
| Q |
116 |
cggttttaacaccatctcgacaagaaagaacaagaattgcactgtcataaatacgcgaagctagttgaaaatc---------atcaacatgaccagaaga |
206 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||| ||| |||||||||| ||||| | |
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| T |
18702662 |
tggttttaacaccatcaacacaagaaagaacaagaattgcactgtcgaaaatacgcgaagctagctgaacatcaactttgaaatcaacatgatcagaaca |
18702761 |
T |
|
| Q |
207 |
tatcttctccaaaaaattatca |
228 |
Q |
| |
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|||||||||||||||| ||||| |
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| T |
18702762 |
tatcttctccaaaaaagtatca |
18702783 |
T |
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