View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19400_low_2 (Length: 549)

Name: NF19400_low_2
Description: NF19400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19400_low_2
NF19400_low_2
[»] chr8 (6 HSPs)
chr8 (334-533)||(5657865-5658070)
chr8 (334-533)||(31100694-31100899)
chr8 (334-533)||(14677844-14678048)
chr8 (449-533)||(27541502-27541586)
chr8 (334-404)||(33689120-33689190)
chr8 (486-533)||(5662659-5662706)
[»] chr7 (4 HSPs)
chr7 (334-533)||(43071204-43071409)
chr7 (334-533)||(1262182-1262388)
chr7 (334-533)||(48849628-48849834)
chr7 (328-533)||(26909800-26910008)
[»] chr2 (6 HSPs)
chr2 (334-533)||(12741782-12741987)
chr2 (334-533)||(23348802-23349007)
chr2 (334-533)||(18355135-18355340)
chr2 (334-533)||(10328719-10328919)
chr2 (456-529)||(1615865-1615938)
chr2 (449-533)||(24454608-24454693)
[»] chr5 (9 HSPs)
chr5 (334-533)||(7473311-7473516)
chr5 (334-533)||(9043896-9044101)
chr5 (334-533)||(30442369-30442574)
chr5 (431-533)||(22009453-22009555)
chr5 (202-328)||(18447899-18448025)
chr5 (202-328)||(36405693-36405819)
chr5 (334-404)||(22009362-22009432)
chr5 (353-404)||(19085165-19085216)
chr5 (490-533)||(22004441-22004484)
[»] chr3 (12 HSPs)
chr3 (334-534)||(31685170-31685376)
chr3 (340-533)||(53973114-53973313)
chr3 (334-533)||(19881933-19882138)
chr3 (334-533)||(37982443-37982651)
chr3 (453-533)||(17681860-17681941)
chr3 (202-317)||(55351815-55351930)
chr3 (484-528)||(2550035-2550079)
chr3 (490-533)||(12538620-12538663)
chr3 (490-533)||(24761882-24761925)
chr3 (490-533)||(24816009-24816052)
chr3 (490-533)||(53027736-53027779)
chr3 (353-406)||(5577884-5577937)
[»] scaffold0045 (1 HSPs)
scaffold0045 (334-533)||(11456-11661)
[»] chr6 (4 HSPs)
chr6 (334-533)||(33045253-33045458)
chr6 (352-484)||(10092641-10092779)
chr6 (486-533)||(8976498-8976545)
chr6 (503-533)||(10092606-10092636)
[»] scaffold0596 (1 HSPs)
scaffold0596 (334-533)||(748-953)
[»] chr4 (2 HSPs)
chr4 (334-533)||(29863183-29863388)
chr4 (352-404)||(55819837-55819889)
[»] scaffold0035 (1 HSPs)
scaffold0035 (334-533)||(35157-35360)
[»] scaffold0096 (1 HSPs)
scaffold0096 (490-533)||(27503-27546)


Alignment Details
Target: chr8 (Bit Score: 136; Significance: 1e-70; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 334 - 533
Target Start/End: Complemental strand, 5658070 - 5657865
Alignment:
Q  334 agaagaaataatgggagaggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg------caatttgaaaatttgaggataat 427  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||      |||||||  |||| |||||||||    
T  5658070 agaaggaataatgggagaggagagaagagaac-ttaaaaatgaaggagaaagaggtgggcatcgataagtgtggagtcaatttgggaattggaggataat 5657972  T
Q  428 -aatgagtcaaaacttggataagtgcatgggaaatatacatcaaatttgaaattttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 526  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  5657971 taatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttaaccaaatg 5657872  T
Q  527 atgagat 533  Q
    |||||||    
T  5657871 atgagat 5657865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 334 - 533
Target Start/End: Original strand, 31100694 - 31100899
Alignment:
Q  334 agaagaaataatgggagaggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg------caatttgaaaatttgaggataat 427  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||      |||||||  |||| |||||||||    
T  31100694 agaaggaataatgggagaggagagaagagaac-ttaaaaatgaaggagaaagaggtgggcatcgataagtgtggagtcaatttgggaattggaggataat 31100792  T
Q  428 -aatgagtcaaaacttggataagtgcatgggaaatatacatcaaatttgaaattttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 526  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||    
T  31100793 taatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatacatgcttaaccaaatg 31100892  T
Q  527 atgagat 533  Q
    |||||||    
T  31100893 atgagat 31100899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 334 - 533
Target Start/End: Original strand, 14677844 - 14678048
Alignment:
Q  334 agaagaaataatgggagaggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg------caatttgaaaatttgaggataat 427  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || ||| ||||||||      |||||||  |||| || ||||||    
T  14677844 agaaggaataatgggagaggagagaagagaac-ttaaaaatgaaggagaaagaggtggacat-gataagtgtggagtcaatttgggaattggatgataat 14677941  T
Q  428 -aatgagtcaaaacttggataagtgcatgggaaatatacatcaaatttgaaattttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 526  Q
     ||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14677942 taatgagtcaaaacttggataagtgcataggaaatatacattaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 14678041  T
Q  527 atgagat 533  Q
    |||||||    
T  14678042 atgagat 14678048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 449 - 533
Target Start/End: Original strand, 27541502 - 27541586
Alignment:
Q  449 gtgcatgggaaatatacatcaaatttgaaattttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgagat 533  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27541502 gtgcataggaaatatacatcaaatttgaaagtttgattcagattagatcaaaggatgagatgcatgcttagccaaatgatgagat 27541586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 334 - 404
Target Start/End: Original strand, 33689120 - 33689190
Alignment:
Q  334 agaagaaataatgggagaggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg 404  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| || ||||||||    
T  33689120 agaaggaataatgggagaggagagaagagaacgttaacaatgaaggagaaagaggtgggtatggataagtg 33689190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 486 - 533
Target Start/End: Complemental strand, 5662706 - 5662659
Alignment:
Q  486 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagat 533  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||    
T  5662706 tcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagat 5662659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 1e-70; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 334 - 533
Target Start/End: Original strand, 43071204 - 43071409
Alignment:
Q  334 agaagaaataatgggagaggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg------caatttgaaaatttgaggataat 427  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||      |||||||  |||| |||||||||    
T  43071204 agaaggaataatgggagaggagagaagagaac-ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataat 43071302  T
Q  428 -aatgagtcaaaacttggataagtgcatgggaaatatacatcaaatttgaaattttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 526  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43071303 taatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 43071402  T
Q  527 atgagat 533  Q
    |||||||    
T  43071403 atgagat 43071409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 334 - 533
Target Start/End: Complemental strand, 1262388 - 1262182
Alignment:
Q  334 agaagaaataatgggagaggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg------caatttgaaaatttgaggataat 427  Q
    ||||| |||||||||||||||||||||||||| | |||||||||||||||||||| |  ||||||||||||      |||||||  |||| |||||||||    
T  1262388 agaaggaataatgggagaggagagaagagaacttaaaaaatgaaggagaaagaggtgaacatcgataagtgtggagtcaatttgggaattggaggataat 1262289  T
Q  428 -aatgagtcaaaacttggataagtgcatgggaaatatacatcaaatttgaaattttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 526  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1262288 taatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 1262189  T
Q  527 atgagat 533  Q
    |||||||    
T  1262188 atgagat 1262182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 334 - 533
Target Start/End: Original strand, 48849628 - 48849834
Alignment:
Q  334 agaagaaataatgggagaggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg------caatttgaaaatttgaggataat 427  Q
    ||||| |||||||||||| ||||||||||||| | |||||||||||||||||||| |  ||||||||||||      |||||||  ||||||||||||||    
T  48849628 agaaggaataatgggagatgagagaagagaacttaaaaaatgaaggagaaagaggtgaacatcgataagtgtggagtcaatttgggaatttgaggataat 48849727  T
Q  428 -aatgagtcaaaacttggataagtgcatgggaaatatacatcaaatttgaaattttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 526  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48849728 taatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 48849827  T
Q  527 atgagat 533  Q
    |||||||    
T  48849828 atgagat 48849834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 328 - 533
Target Start/End: Original strand, 26909800 - 26910008
Alignment:
Q  328 cacgctagaagaaataatgggagaggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg------caatttgaaaatttgag 421  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| ||||||||      |||| ||  |||| |||    
T  26909800 cacgctagaaggaataatgggagaggagaaaagagaacgttaaaaatgaaggagaaaaaggtgggcatggataagtgtggagtcaatctgggaattggag 26909899  T
Q  422 gataataatgagtcaaaacttggataagtgcatgggaaatatacatcaaatttgaaattttgactcagattagatcaaaggatgagatgcatgcttagcc 521  Q
    |||||   |||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26909900 gataa---tgagtcaaaacttgaataagtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagcc 26909996  T
Q  522 aaatgatgagat 533  Q
    ||||||| ||||    
T  26909997 aaatgataagat 26910008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 1e-70; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 334 - 533
Target Start/End: Complemental strand, 12741987 - 12741782
Alignment:
Q  334 agaagaaataatgggagaggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg------caatttgaaaatttgaggataat 427  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||      |||||||  |||| |||||||||    
T  12741987 agaaggaataatgggagaggagagaagagaac-ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataat 12741889  T
Q  428 -aatgagtcaaaacttggataagtgcatgggaaatatacatcaaatttgaaattttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 526  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12741888 taatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 12741789  T
Q  527 atgagat 533  Q
    |||||||    
T  12741788 atgagat 12741782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 334 - 533
Target Start/End: Original strand, 23348802 - 23349007
Alignment:
Q  334 agaagaaataatgggagaggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg------caatttgaaaatttgaggataat 427  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||      |||||||  |||| |||||||||    
T  23348802 agaaggaataatgggagaggagagaagagaac-ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataat 23348900  T
Q  428 -aatgagtcaaaacttggataagtgcatgggaaatatacatcaaatttgaaattttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 526  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23348901 taatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 23349000  T
Q  527 atgagat 533  Q
    |||||||    
T  23349001 atgagat 23349007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 334 - 533
Target Start/End: Original strand, 18355135 - 18355340
Alignment:
Q  334 agaagaaataatgggagaggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg------caatttgaaaatttgaggataat 427  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||      |||||||  |||| |||||||||    
T  18355135 agaaggaataatgggagaggagagaagagaac-ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataat 18355233  T
Q  428 -aatgagtcaaaacttggataagtgcatgggaaatatacatcaaatttgaaattttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 526  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  18355234 taatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaaatttgactcagattagattaaaggatgagatgcatgcttagccaaatg 18355333  T
Q  527 atgagat 533  Q
    |||||||    
T  18355334 atgagat 18355340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 334 - 533
Target Start/End: Original strand, 10328719 - 10328919
Alignment:
Q  334 agaagaaataatgggagaggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg------caatttgaaaatttgaggataa- 426  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||      |||||||  |||| ||||||||     
T  10328719 agaaggaataatgggagaggagagaagagaac-ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataat 10328817  T
Q  427 taatgagtcaaaacttggataagtgcatgggaaatatacatcaaatttgaaattttgactcagattagatc-aaaggatgagatgcatgcttagccaaat 525  Q
    |||||||||||||||||||||||||||| ||||      |||||||||  || |||||||||||||||||| ||||||||||||||||||||||||||||    
T  10328818 taatgagtcaaaacttggataagtgcataggaa------atcaaattttcaaatttgactcagattagatcaaaaggatgagatgcatgcttagccaaat 10328911  T
Q  526 gatgagat 533  Q
    ||||||||    
T  10328912 gatgagat 10328919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 456 - 529
Target Start/End: Original strand, 1615865 - 1615938
Alignment:
Q  456 ggaaatatacatcaaatttgaaattttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatg 529  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1615865 ggaaatatacatcaaatttgaaagtttgactcaaattagatcaaaggatgagatgcatgcttagccaaatgatg 1615938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 449 - 533
Target Start/End: Complemental strand, 24454693 - 24454608
Alignment:
Q  449 gtgcatgggaaatatacatcaaatttgaaattttgac-tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagat 533  Q
    |||||| ||||| | ||||||||||||||| |||||  ||||||||||||||||||||||||| |||   ||||||||||||||||    
T  24454693 gtgcataggaaaaagacatcaaatttgaaagtttgaagtcagattagatcaaaggatgagatgaatgtcaagccaaatgatgagat 24454608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 132; Significance: 3e-68; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 334 - 533
Target Start/End: Original strand, 7473311 - 7473516
Alignment:
Q  334 agaagaaataatgggagaggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg------caatttgaaaatttgaggataa- 426  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||      |||||||  |||| ||||||||     
T  7473311 agaaggaataatgggagaggagagaagagaac-ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataac 7473409  T
Q  427 taatgagtcaaaacttggataagtgcatgggaaatatacatcaaatttgaaattttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 526  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  7473410 taatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagctaaatg 7473509  T
Q  527 atgagat 533  Q
    |||||||    
T  7473510 atgagat 7473516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 334 - 533
Target Start/End: Complemental strand, 9044101 - 9043896
Alignment:
Q  334 agaagaaataatgggagaggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg------caatttgaaaatttgaggataat 427  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||      |||||||  |||| |||||||||    
T  9044101 agaaggaataatgggagaggagagaagagaac-ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataat 9044003  T
Q  428 -aatgagtcaaaacttggataagtgcatgggaaatatacatcaaatttgaaattttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 526  Q
     ||||||||||||||||||||| ||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9044002 taatgagtcaaaacttggataaatgcataggaaatatacatcaaatttaaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 9043903  T
Q  527 atgagat 533  Q
    |||||||    
T  9043902 atgagat 9043896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 334 - 533
Target Start/End: Original strand, 30442369 - 30442574
Alignment:
Q  334 agaagaaataatgggagaggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg------caatttgaaaatttgaggataat 427  Q
    ||||| ||||||| ||| |||||||||||||| |||||| ||||||||||||||| || ||||||||||||      |||||||  |||| |||||||||    
T  30442369 agaaggaataatgagagtggagagaagagaactttaaaa-tgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataat 30442467  T
Q  428 -aatgagtcaaaacttggataagtgcatgggaaatatacatcaaatttgaaattttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 526  Q
     |||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30442468 taatgagtcaaaacttggaaaagtgcataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 30442567  T
Q  527 atgagat 533  Q
    |||||||    
T  30442568 atgagat 30442574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 431 - 533
Target Start/End: Original strand, 22009453 - 22009555
Alignment:
Q  431 gagtcaaaacttggataagtgcatgggaaatatacatcaaatttgaaattttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatga 530  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22009453 gagtcaaaacttggataagagcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatga 22009552  T
Q  531 gat 533  Q
    |||    
T  22009553 gat 22009555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 18447899 - 18448025
Alignment:
Q  202 aataatttcacaaatagaaatgggtcatccacagtttctgagttcctgtctaatcacaccatgatcttcataccaccgttggaattatctgagaatctcg 301  Q
    ||||||| | ||||||||||| ||||||| ||||||  ||||||| ||  ||||||||||||||||||||||| | |||| |||||  | | ||||| |     
T  18447899 aataattgctcaaatagaaattggtcatcaacagttgatgagttcatgcttaatcacaccatgatcttcatacaaacgttcgaatttacggcgaatcaca 18447998  T
Q  302 ccactccaccgccgacctcgacaaagc 328  Q
    |||||||||| ||||||| | ||||||    
T  18447999 ccactccaccaccgaccttgtcaaagc 18448025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 36405693 - 36405819
Alignment:
Q  202 aataatttcacaaatagaaatgggtcatccacagtttctgagttcctgtctaatcacaccatgatcttcataccaccgttggaattatctgagaatctcg 301  Q
    ||||||| ||| ||||||||||||||||| |||||   ||||||| ||| ||||||||||||||||||||||| || ||| |||||  | |  |||| |     
T  36405693 aataattgcacgaatagaaatgggtcatcaacagtggatgagttcatgtttaatcacaccatgatcttcatacaacggttcgaatttacggcaaatcaca 36405792  T
Q  302 ccactccaccgccgacctcgacaaagc 328  Q
    |||||||||| ||||||| | ||||||    
T  36405793 ccactccaccaccgaccttgtcaaagc 36405819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 334 - 404
Target Start/End: Original strand, 22009362 - 22009432
Alignment:
Q  334 agaagaaataatgggagaggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg 404  Q
    ||||| |||||||||||||||||||| |||| ||| |||| |||||||||| |||  ||||||||||||||    
T  22009362 agaaggaataatgggagaggagagaacagaaagttgaaaaggaaggagaaaaaggttggcatcgataagtg 22009432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 404
Target Start/End: Original strand, 19085165 - 19085216
Alignment:
Q  353 gagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg 404  Q
    |||||||||||| | |||||||| |||||||||||| ||| |||||||||||    
T  19085165 gagagaagagaagggtaaaaatggaggagaaagaggtgggtatcgataagtg 19085216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 533
Target Start/End: Original strand, 22004441 - 22004484
Alignment:
Q  490 attagatcaaaggatgagatgcatgcttagccaaatgatgagat 533  Q
    ||||||||||||||||| ||| ||||| ||||||||||||||||    
T  22004441 attagatcaaaggatgatatgaatgctgagccaaatgatgagat 22004484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 2e-66; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 334 - 534
Target Start/End: Complemental strand, 31685376 - 31685170
Alignment:
Q  334 agaagaaataatgggagaggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg------caatttgaaaatttgaggataat 427  Q
    ||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||| || ||||||||||||      |||||||| |||| |||||||||    
T  31685376 agaaggaataatggaagaggagagaaaagaac-ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgagaattggaggataat 31685278  T
Q  428 -aatgagtcaaaacttggataagtgcatgggaaatatacatcaaatttgaaattttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 526  Q
     |||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31685277 taatgagtcaaaacttgaataagtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 31685178  T
Q  527 atgagatt 534  Q
    ||||||||    
T  31685177 atgagatt 31685170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 340 - 533
Target Start/End: Original strand, 53973114 - 53973313
Alignment:
Q  340 aataatgggagaggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg------caatttgaaaatttgaggataat-aatga 432  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||| || ||||||||||||      |||||||| |||| ||||||||| |||||    
T  53973114 aataatgggagaggagagaagaaaac-ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgagaattggaggataattaatga 53973212  T
Q  433 gtcaaaacttggataagtgcatgggaaatatacatcaaatttgaaattttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatgaga 532  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  53973213 gtcaaaatttggataagtgcataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcaggcttagccaaatgatgaga 53973312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 334 - 533
Target Start/End: Original strand, 19881933 - 19882138
Alignment:
Q  334 agaagaaataatgggagaggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg------caatttgaaaatttgaggataat 427  Q
    ||||| |||||||||||||||||||||| ||| |||||||||||||||||||||| || ||||||||| ||      |||||||  |||| |||||||||    
T  19881933 agaaggaataatgggagaggagagaagataac-ttaaaaatgaaggagaaagaggtggacatcgataaatgtggagtcaatttgggaattggaggataat 19882031  T
Q  428 -aatgagtcaaaacttggataagtgcatgggaaatatacatcaaatttgaaattttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 526  Q
     |||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19882032 taatgagtcaaaatttggataagtgcataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 19882131  T
Q  527 atgagat 533  Q
    |||||||    
T  19882132 atgagat 19882138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 334 - 533
Target Start/End: Complemental strand, 37982651 - 37982443
Alignment:
Q  334 agaagaaataatgggagaggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg------caatttgaaaatttgaggataat 427  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||      |||||||  |||| |||||||||    
T  37982651 agaaggaataatgggagaggagagaagagaac-ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataat 37982553  T
Q  428 -aatgagtcaaaacttggataag---tgcatgggaaatatacatcaaatttgaaattttgactcagattagatcaaaggatgagatgcatgcttagccaa 523  Q
     ||||||||||||||||||||||   ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  37982552 taatgagtcaaaacttggataagacgtgcataggaaatatacatcaaatttgaaaatttgactcagattagattaaaggatgagatgcatgcttagccaa 37982453  T
Q  524 atgatgagat 533  Q
    ||||||||||    
T  37982452 atgatgagat 37982443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 453 - 533
Target Start/End: Complemental strand, 17681941 - 17681860
Alignment:
Q  453 atgggaaatatacatcaaatttgaaattttgactca-gattagatcaaaggatgagatgcatgcttagccaaatgatgagat 533  Q
    ||||||||||||||| |||||| ||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  17681941 atgggaaatatacattaaatttaaaaatttgactcaagattagatcaaaggatgagatgcatgcttaaccaaatgatgagat 17681860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 202 - 317
Target Start/End: Complemental strand, 55351930 - 55351815
Alignment:
Q  202 aataatttcacaaatagaaatgggtcatccacagtttctgagttcctgtctaatcacaccatgatcttcataccaccgttggaattatctgagaatctcg 301  Q
    ||||||| |||||||||||||| |||||| ||||||  ||||||| ||| ||||||||||||||||||||||| |||||| |||||  | | ||||| |     
T  55351930 aataattgcacaaatagaaatgagtcatcaacagttgatgagttcttgtttaatcacaccatgatcttcatacaaccgttcgaatttacggcgaatcaca 55351831  T
Q  302 ccactccaccgccgac 317  Q
    |||||||||| |||||    
T  55351830 ccactccaccaccgac 55351815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 484 - 528
Target Start/End: Complemental strand, 2550079 - 2550035
Alignment:
Q  484 actcagattagatcaaaggatgagatgcatgcttagccaaatgat 528  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  2550079 actcagattaaatcaaaggatgagatgcatgcttagccaaatgat 2550035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 490 - 533
Target Start/End: Original strand, 12538620 - 12538663
Alignment:
Q  490 attagatcaaaggatgagatgcatgcttagccaaatgatgagat 533  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  12538620 attagatcaaaggatgtgatgcatgcttagccaaatgatgagat 12538663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 490 - 533
Target Start/End: Original strand, 24761882 - 24761925
Alignment:
Q  490 attagatcaaaggatgagatgcatgcttagccaaatgatgagat 533  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  24761882 attagatcaaaggatgagatgcatgctgagccaaatgatgagat 24761925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 490 - 533
Target Start/End: Complemental strand, 24816052 - 24816009
Alignment:
Q  490 attagatcaaaggatgagatgcatgcttagccaaatgatgagat 533  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  24816052 attagatcaaaggatgagatgcatgctgagccaaatgatgagat 24816009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 490 - 533
Target Start/End: Original strand, 53027736 - 53027779
Alignment:
Q  490 attagatcaaaggatgagatgcatgcttagccaaatgatgagat 533  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  53027736 attagatcaaaggatgagatgcatgctgagccaaatgatgagat 53027779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 406
Target Start/End: Original strand, 5577884 - 5577937
Alignment:
Q  353 gagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtgca 406  Q
    |||||||||||| | |||||||| |||||||||||| ||||||| |||| ||||    
T  5577884 gagagaagagaagggtaaaaatggaggagaaagaggtgggcatcaataattgca 5577937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 128; Significance: 6e-66; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 334 - 533
Target Start/End: Original strand, 11456 - 11661
Alignment:
Q  334 agaagaaataatgggagaggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg------caatttgaaaatttgaggataat 427  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||      |||||||  |||| |||||||||    
T  11456 agaaggaataatgggagaggagagaagagaac-ttaaaaatgaaggagaaagaggtgggcatcaataagtgtggagtcaatttgggaattggaggataat 11554  T
Q  428 -aatgagtcaaaacttggataagtgcatgggaaatatacatcaaatttgaaattttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 526  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||    
T  11555 gaatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaagtttgactcagattaaatcaaaggatgagatgcatgcttaaccaaatg 11654  T
Q  527 atgagat 533  Q
    |||||||    
T  11655 atgagat 11661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 6e-66; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 334 - 533
Target Start/End: Original strand, 33045253 - 33045458
Alignment:
Q  334 agaagaaataatgggagaggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg------caatttgaaaatttgaggataat 427  Q
    ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| || ||||||||||||      |||||||  |||| |||||||||    
T  33045253 agaaggaataatgggagaggagacaagagaac-ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataat 33045351  T
Q  428 -aatgagtcaaaacttggataagtgcatgggaaatatacatcaaatttgaaattttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 526  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  33045352 taatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttaaccaaatg 33045451  T
Q  527 atgagat 533  Q
    |||||||    
T  33045452 atgagat 33045458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 352 - 484
Target Start/End: Complemental strand, 10092779 - 10092641
Alignment:
Q  352 ggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg------caatttgaaaatttgaggataa-taatgagtcaaaacttgg 444  Q
    |||||| ||||||| |||||||||||||||||||||| || ||||||||||||      ||||||| ||||| |||||||| |||||| |||||||||||    
T  10092779 ggagaggagagaac-ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttggaaattggaggataactaatgaatcaaaacttgg 10092681  T
Q  445 ataagtgcatgggaaatatacatcaaatttgaaattttga 484  Q
    ||| |||||| ||||||||||||||||||||||| |||||    
T  10092680 ataggtgcataggaaatatacatcaaatttgaaagtttga 10092641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 486 - 533
Target Start/End: Complemental strand, 8976545 - 8976498
Alignment:
Q  486 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagat 533  Q
    ||||||||||||||||||||||||||||| ||||| |||| |||||||    
T  8976545 tcagattagatcaaaggatgagatgcatgtttagctaaataatgagat 8976498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 503 - 533
Target Start/End: Complemental strand, 10092636 - 10092606
Alignment:
Q  503 atgagatgcatgcttagccaaatgatgagat 533  Q
    |||||||||||||||||||||||||||||||    
T  10092636 atgagatgcatgcttagccaaatgatgagat 10092606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 334 - 533
Target Start/End: Complemental strand, 953 - 748
Alignment:
Q  334 agaagaaataatgggagaggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg------caatttgaaaatttgaggataat 427  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||      |||||||  ||||  | ||||||    
T  953 agaaggaataatgggagaggagagaagagaac-ttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattgaatgataat 855  T
Q  428 -aatgagtcaaaacttggataagtgcatgggaaatatacatcaaatttgaaattttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 526  Q
     |||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  854 taatgagtcaaaatttggataagtgcataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 755  T
Q  527 atgagat 533  Q
    |||||||    
T  754 atgagat 748  T

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Target: chr4 (Bit Score: 120; Significance: 4e-61; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 334 - 533
Target Start/End: Original strand, 29863183 - 29863388
Alignment:
Q  334 agaagaaataatgggagaggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg------caatttgaaaatttgaggataat 427  Q
    ||||| ||||||||||||||||| |||||||| | |||||||||||||||||||| || ||||||||||||      |||||||  |||| |||||||||    
T  29863183 agaaggaataatgggagaggagataagagaac-taaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataat 29863281  T
Q  428 -aatgagtcaaaacttggataagtgcatgggaaatatacatcaaatttgaaattttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 526  Q
     |||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  29863282 taatgagtcaaaacttggataagtgcataagaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgctcagccaaatg 29863381  T
Q  527 atgagat 533  Q
    |||||||    
T  29863382 atgagat 29863388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 404
Target Start/End: Original strand, 55819837 - 55819889
Alignment:
Q  352 ggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtg 404  Q
    ||||||||||||| | |||||||| |||||||||||| | |||||||| ||||    
T  55819837 ggagagaagagaaggataaaaatggaggagaaagaggtgtgcatcgatgagtg 55819889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 334 - 533
Target Start/End: Complemental strand, 35360 - 35157
Alignment:
Q  334 agaagaaataatgggagaggagagaagagaacgttaaaaatgaaggagaaagaggcgggcatcgataagtgc------aatttgaaaatttgaggataat 427  Q
    ||||| ||||||||||||||||||  |||||| |||||||||||||||||| ||| || ||||||||||||       ||||||  |||| |||||||||    
T  35360 agaaggaataatgggagaggagag--gagaac-ttaaaaatgaaggagaaaaaggtggacatcgataagtgtggagttaatttgggaattggaggataat 35264  T
Q  428 -aatgagtcaaaacttggataagtgcatgggaaatatacatcaaatttgaaattttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 526  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35263 taatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatg 35164  T
Q  527 atgagat 533  Q
    |||||||    
T  35163 atgagat 35157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 490 - 533
Target Start/End: Complemental strand, 27546 - 27503
Alignment:
Q  490 attagatcaaaggatgagatgcatgcttagccaaatgatgagat 533  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27546 attagatcaaaggatgagatgcatgcttagccaaatgatgagat 27503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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