View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19400_low_20 (Length: 283)

Name: NF19400_low_20
Description: NF19400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19400_low_20
NF19400_low_20
[»] chr4 (4 HSPs)
chr4 (123-280)||(6122266-6122423)
chr4 (1-126)||(6122101-6122226)
chr4 (43-86)||(21765501-21765544)
chr4 (51-83)||(29095112-29095144)
[»] chr7 (4 HSPs)
chr7 (47-85)||(24622649-24622687)
chr7 (43-78)||(30018259-30018294)
chr7 (43-85)||(47872982-47873024)
chr7 (45-85)||(31718948-31718988)
[»] chr8 (2 HSPs)
chr8 (41-86)||(9090958-9091003)
chr8 (42-95)||(41957535-41957588)
[»] chr1 (5 HSPs)
chr1 (34-95)||(25954068-25954129)
chr1 (44-87)||(39957672-39957715)
chr1 (43-85)||(7890420-7890462)
chr1 (43-92)||(28701679-28701728)
chr1 (49-85)||(13199088-13199124)
[»] chr5 (1 HSPs)
chr5 (48-95)||(8223117-8223164)
[»] chr3 (2 HSPs)
chr3 (48-94)||(7882838-7882884)
chr3 (48-85)||(42984326-42984363)
[»] chr2 (1 HSPs)
chr2 (51-88)||(28829745-28829782)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 123 - 280
Target Start/End: Original strand, 6122266 - 6122423
Alignment:
Q  123 caagtcatgttataacaataaactaatttgaccatggnnnnnnnncatcatattttcatgcatgttaccttaacactgtcacacactttccaatatcaaa 222  Q
    |||||||||||||||||||||| ||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6122266 caagtcatgttataacaataaagtaatttgaccatggaaaaaaaacatcatattttcatgcatgttaccttaacactgtcacacactttccaatatcaaa 6122365  T
Q  223 tcttccccgtggcctctgccccccaaaagaaaaatcatttcataattaaggtctactg 280  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6122366 tcttccccgtcgcctctgccccccaaaagaaaaatcatttcataattaaggtctactg 6122423  T

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Target: chr4; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 6122101 - 6122226
Alignment:
Q  1 tgtatagtaacataagtcttatattatgcatcaatttccgtcattgaatcaataaattttatcattaaattaaatgaaatatgataaaacttttttatga 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6122101 tgtatagtgacataagtcttatattatgcatcaatttccgtcattaaatcaataaattttaccattaaattaaatgaaatatgataaaacttttttatga 6122200  T
Q  101 taagagaatcatttacatgatacaag 126  Q
    ||||||||||||||||||||||||||    
T  6122201 taagagaatcatttacatgatacaag 6122226  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 21765544 - 21765501
Alignment:
Q  43 attgaatcaataaattttatcattaaattaaatgaaatatgata 86  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||    
T  21765544 attgaatcaataaatttcatcattagattaaatgaaatatgata 21765501  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 29095112 - 29095144
Alignment:
Q  51 aataaattttatcattaaattaaatgaaatatg 83  Q
    ||||||||||| |||||||||||||||||||||    
T  29095112 aataaattttaccattaaattaaatgaaatatg 29095144  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 24622687 - 24622649
Alignment:
Q  47 aatcaataaattttatcattaaattaaatgaaatatgat 85  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  24622687 aatcaataaattttatcattaaattaaatgagatatgat 24622649  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 78
Target Start/End: Original strand, 30018259 - 30018294
Alignment:
Q  43 attgaatcaataaattttatcattaaattaaatgaa 78  Q
    ||||| ||||||||||||||||||||||||||||||    
T  30018259 attgagtcaataaattttatcattaaattaaatgaa 30018294  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 47872982 - 47873024
Alignment:
Q  43 attgaatcaataaattttatcattaaattaaatgaaatatgat 85  Q
    ||||| |||||||||||||  ||||||||||||||||||||||    
T  47872982 attgagtcaataaattttactattaaattaaatgaaatatgat 47873024  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 31718988 - 31718948
Alignment:
Q  45 tgaatcaataaattttatcattaaattaaatgaaatatgat 85  Q
    ||||||||||||| ||| |||||||| ||||||||||||||    
T  31718988 tgaatcaataaatcttaccattaaatcaaatgaaatatgat 31718948  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 9091003 - 9090958
Alignment:
Q  41 tcattgaatcaataaattttatcattaaattaaatgaaatatgata 86  Q
    ||||||||||||||||||||||| ||||||||||||| | ||||||    
T  9091003 tcattgaatcaataaattttatccttaaattaaatgagaaatgata 9090958  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 41957588 - 41957535
Alignment:
Q  42 cattgaatcaataaattttatcattaaattaaatgaaatatgataaaacttttt 95  Q
    |||||||||||||||||| |  |||||||||||| ||||||||||  |||||||    
T  41957588 cattgaatcaataaatttcacgattaaattaaataaaatatgatatgacttttt 41957535  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 25954068 - 25954129
Alignment:
Q  34 atttccgtcattgaatcaataaattttatcattaaattaaatgaaatatgataaaacttttt 95  Q
    |||||| ||||||||||||||||| | |||| ||||||||| ||||||||||| || |||||    
T  25954068 atttccatcattgaatcaataaatctcatcaataaattaaaagaaatatgatataatttttt 25954129  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 39957672 - 39957715
Alignment:
Q  44 ttgaatcaataaattttatcattaaattaaatgaaatatgataa 87  Q
    |||||||||||||| ||||| ||| |||||||||||||||||||    
T  39957672 ttgaatcaataaatcttatcgttatattaaatgaaatatgataa 39957715  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 7890420 - 7890462
Alignment:
Q  43 attgaatcaataaattttatcattaaattaaatgaaatatgat 85  Q
    |||| |||||||||||| | |||||||||||||||||||||||    
T  7890420 attggatcaataaatttcaccattaaattaaatgaaatatgat 7890462  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 28701728 - 28701679
Alignment:
Q  43 attgaatcaataaattttatcattaaattaaatgaaatatgataaaactt 92  Q
    |||||||||||||| || ||||||| || |||||||||||||||| ||||    
T  28701728 attgaatcaataaagttcatcattagatcaaatgaaatatgataatactt 28701679  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 13199124 - 13199088
Alignment:
Q  49 tcaataaattttatcattaaattaaatgaaatatgat 85  Q
    |||||||||||||| |||||||||||| |||||||||    
T  13199124 tcaataaattttattattaaattaaattaaatatgat 13199088  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 8223117 - 8223164
Alignment:
Q  48 atcaataaattttatcattaaattaaatgaaatatgataaaacttttt 95  Q
    |||||||||| ||||||||||||||||| ||||| |||| ||||||||    
T  8223117 atcaataaatcttatcattaaattaaataaaatacgatataacttttt 8223164  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 7882884 - 7882838
Alignment:
Q  48 atcaataaattttatcattaaattaaatgaaatatgataaaactttt 94  Q
    ||||||||||||||| |||||||||||||| | |||||| |||||||    
T  7882884 atcaataaattttattattaaattaaatgagaaatgatataactttt 7882838  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 42984363 - 42984326
Alignment:
Q  48 atcaataaattttatcattaaattaaatgaaatatgat 85  Q
    |||||||||||||||||||||||||||| | |||||||    
T  42984363 atcaataaattttatcattaaattaaataatatatgat 42984326  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 28829745 - 28829782
Alignment:
Q  51 aataaattttatcattaaattaaatgaaatatgataaa 88  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  28829745 aataaattttatcattaaataaaatggaatatgataaa 28829782  T

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