View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19400_low_21 (Length: 259)
Name: NF19400_low_21
Description: NF19400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19400_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 244
Target Start/End: Complemental strand, 32918922 - 32918691
Alignment:
| Q |
13 |
aatataaatgttgcatttttaatgaagattttctacttttttgaatctataatcagtttctttaaaatacttatgatcatttgcaagctaaaaactagtt |
112 |
Q |
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| T |
32918922 |
aatataaatgttgcatttttaatgaagattttctacttttttgaatctataatcagtttctttaaaatacttatgatcatttgcaagctaaaaactagtt |
32918823 |
T |
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| Q |
113 |
atgtattaaggtgattacctgcataatgtaccatatagaaaacgtgacacagcataaaactgtaataagtgaaccctttaacccactctcactaatagaa |
212 |
Q |
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| T |
32918822 |
atgtattaaggtgattacctgcataatgtaccatatagaaaacgtgacacagcataaaactgtaataagtgaaccctttaacccactctcactaacagaa |
32918723 |
T |
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| Q |
213 |
gcactttttggttgaatatggattagaggact |
244 |
Q |
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| T |
32918722 |
gcactttttggttgaatatggattagaggact |
32918691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 91 - 230
Target Start/End: Complemental strand, 32884806 - 32884667
Alignment:
| Q |
91 |
atttgcaagctaaaaactagttatgtattaaggtgattacctgcataatgtaccatatagaaaacgtgacacagcataaaactgtaataagtgaaccctt |
190 |
Q |
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| T |
32884806 |
atttgcaagctaaaaactagttatgagttaaggtgtgaacctgcataatgtaccatatagaaaaagtggcacaacatgagatagtaagaagtgaaccctt |
32884707 |
T |
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| Q |
191 |
taacccactctcactaatagaagcactttttggttgaata |
230 |
Q |
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| T |
32884706 |
taatccactctcgttgatagaagaactttttcgttgaata |
32884667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 57 - 243
Target Start/End: Complemental strand, 32895540 - 32895354
Alignment:
| Q |
57 |
atctataatcagtttctttaaaatacttatgatcatttgcaagctaaaaactagttatgtattaaggtgattacctgcataatgtaccatatagaaaacg |
156 |
Q |
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| T |
32895540 |
atctttaatcaattcctttaaaataattatcaccacttgctaggtaaaaattagtcatgagtttagatgataacctgcataatgtaccagatggacaatg |
32895441 |
T |
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| Q |
157 |
tgacacagcataaaactgtaataagtgaaccctttaacccactctcactaatagaagcactttttggttgaatatggattagaggac |
243 |
Q |
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| T |
32895440 |
tgacacaacatgtaacagtaagaattgaacccttcaacccagtctcattgataggagcactttttggttgaatatggattagtggac |
32895354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 243
Target Start/End: Complemental strand, 32934919 - 32934766
Alignment:
| Q |
90 |
catttgcaagctaaaaactagttatgtattaaggtgattacctgcataatgtaccatatagaaaacgtgacacagcataaaactgtaataagtgaaccct |
189 |
Q |
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||||||| | |||||||||||| ||| ||||| ||| |||||||||||||| | ||||||| |||||||| ||| ||| ||||| ||||||||||| |
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| T |
32934919 |
catttgccaactaaaaactagtcatgagttaagatgagaacctgcataatgtagcctatagaagttgtgacacaacatgaaattgtaacaagtgaaccct |
32934820 |
T |
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| Q |
190 |
ttaacccactctcactaatagaagcactttttggttgaatatggattagaggac |
243 |
Q |
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|||||| ||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
32934819 |
ttaaccaactctcatgggtagaagcacttttctgttgaatatggattagaggac |
32934766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 129 - 241
Target Start/End: Complemental strand, 32951262 - 32951150
Alignment:
| Q |
129 |
acctgcataatgtaccatatagaaaacgtgacacagcataaaactgtaataagtgaaccctttaacccactctcactaatagaagcactttttggttgaa |
228 |
Q |
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||||||||||||||| ||||||||| |||||||| || ||| |||| |||||||||||||| || ||||| | | |||||||||||||||||||||| |
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| T |
32951262 |
acctgcataatgtacgatatagaaattgtgacacaaaatgtaaccgtaagaagtgaaccctttatccaactcttattgatagaagcactttttggttgaa |
32951163 |
T |
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| Q |
229 |
tatggattagagg |
241 |
Q |
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| T |
32951162 |
tatggattagagg |
32951150 |
T |
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