View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19400_low_25 (Length: 233)

Name: NF19400_low_25
Description: NF19400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19400_low_25
NF19400_low_25
[»] chr2 (4 HSPs)
chr2 (45-217)||(34563208-34563379)
chr2 (18-105)||(39819060-39819150)
chr2 (30-91)||(12918545-12918606)
chr2 (45-105)||(7755363-7755423)
[»] chr8 (2 HSPs)
chr8 (45-105)||(31470771-31470831)
chr8 (45-105)||(7931595-7931655)
[»] chr6 (3 HSPs)
chr6 (30-105)||(28581803-28581877)
chr6 (45-97)||(369498-369550)
chr6 (45-105)||(16193757-16193817)
[»] chr1 (7 HSPs)
chr1 (30-105)||(10449519-10449593)
chr1 (30-105)||(9379830-9379905)
chr1 (30-105)||(9884853-9884928)
chr1 (18-98)||(6539637-6539720)
chr1 (46-105)||(15928145-15928204)
chr1 (37-98)||(44938872-44938933)
chr1 (45-105)||(50754751-50754811)
[»] chr4 (10 HSPs)
chr4 (18-95)||(32008317-32008397)
chr4 (18-105)||(31846862-31846952)
chr4 (37-105)||(53937919-53937987)
chr4 (45-105)||(6607466-6607526)
chr4 (45-105)||(31012154-31012214)
chr4 (45-105)||(32224311-32224371)
chr4 (45-87)||(54223580-54223622)
chr4 (37-74)||(44023039-44023076)
chr4 (45-85)||(9712943-9712983)
chr4 (18-69)||(54613030-54613084)
[»] scaffold0343 (1 HSPs)
scaffold0343 (45-102)||(12281-12338)
[»] chr3 (5 HSPs)
chr3 (30-87)||(29081611-29081668)
chr3 (45-105)||(22893970-22894030)
chr3 (45-105)||(31342034-31342094)
chr3 (45-105)||(11512414-11512474)
chr3 (29-91)||(20286915-20286977)
[»] chr7 (4 HSPs)
chr7 (56-104)||(25099321-25099369)
chr7 (45-105)||(17272726-17272786)
chr7 (47-105)||(7211969-7212027)
chr7 (45-97)||(7211887-7211939)
[»] chr5 (5 HSPs)
chr5 (45-105)||(42772036-42772096)
chr5 (18-91)||(29385370-29385446)
chr5 (30-103)||(1839983-1840056)
chr5 (32-98)||(7137655-7137721)
chr5 (45-105)||(9177916-9177976)
[»] scaffold0001 (1 HSPs)
scaffold0001 (33-105)||(507731-507803)


Alignment Details
Target: chr2 (Bit Score: 139; Significance: 7e-73; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 45 - 217
Target Start/End: Complemental strand, 34563379 - 34563208
Alignment:
Q  45 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt-atactcattttcaaattgcaccggtcatgctacaaaat 143  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34563379 gtgacattgaccaacttcaatgtcacaagtatctttcttcattttctttcacaatattttttatactcattttcaaattgcaccggtcatgctacaaaat 34563280  T
Q  144 ggtagattcaatttaaatatctaaaagaaacatatcagccaccttccttggcaatccacgctgaagcacaaaac 217  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||    
T  34563279 ggtagattcaatttaaatatctaaaag--acatatcagccaccttccttggcaatccacgttgaagcacaaaac 34563208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 39819060 - 39819150
Alignment:
Q  18 acttgggtgacat---ggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 105  Q
    |||||||||||||   ||||| ||||||| ||||||||| |||||| |||||||||| ||  ||||||||||||||| |||||| ||||||    
T  39819060 acttgggtgacattgtggttggtgacattggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagattttt 39819150  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 12918545 - 12918606
Alignment:
Q  30 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttct 91  Q
    |||||||||||||| ||||||||| |||||| |||||||||| ||  |||| ||||||||||    
T  12918545 tggttgatgacattggtgacattggccaaccacaatgtcacatgtggcttttttctttttct 12918606  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 7755363 - 7755423
Alignment:
Q  45 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 105  Q
    ||||||||| |||||| |||||||||||||  |||| |||||||||| | |||| ||||||    
T  7755363 gtgacattggccaaccacaatgtcacaagtggcttttttctttttctttaacaagattttt 7755423  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 31470771 - 31470831
Alignment:
Q  45 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 105  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||    
T  31470771 gtgacattgaccaaccacaatgtcacaagtatcattcttctttttctttcacaatattttt 31470831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 7931655 - 7931595
Alignment:
Q  45 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 105  Q
    ||||||||| | |||| ||||||||||| | |||||||||||| ||| ||| |||||||||    
T  7931655 gtgacattggcaaaccacaatgtcacaaatgtctttcttctttctctttcataatattttt 7931595  T

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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 28581877 - 28581803
Alignment:
Q  30 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 105  Q
    |||||||||||||| |||| |||||||||| ||||| |||||||| |||||||||||| ||| |||||||||||||    
T  28581877 tggttgatgacatt-gtgatattgaccaacatcaatatcacaagtgtctttcttctttctctttcacaatattttt 28581803  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 369550 - 369498
Alignment:
Q  45 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcaca 97  Q
    |||||||||||||||| ||||||||||||| |||||||||||| ||| |||||    
T  369550 gtgacattgaccaaccacaatgtcacaagtgtctttcttctttctctttcaca 369498  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 16193757 - 16193817
Alignment:
Q  45 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 105  Q
    |||| |||| |||| | ||||||||||||| |||||||||||| ||  |||||||||||||    
T  16193757 gtgatattggccaatcacaatgtcacaagtgtctttcttctttctccttcacaatattttt 16193817  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 10449593 - 10449519
Alignment:
Q  30 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 105  Q
    |||||| ||||||| |||||||||  ||||| ||||||||||| |||||||||||||| ||| |||||||||||||    
T  10449593 tggttggtgacatt-gtgacattggtcaaccacaatgtcacaaatatctttcttctttctctttcacaatattttt 10449519  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 9379830 - 9379905
Alignment:
Q  30 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 105  Q
    |||||| ||||||| |||| |||| |||||| |||||||||| ||  ||||||||||||||| |||||| ||||||    
T  9379830 tggttggtgacattggtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagattttt 9379905  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 9884853 - 9884928
Alignment:
Q  30 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 105  Q
    |||||| ||||||| |||||||||  ||||| |||||||||| ||  ||||||||||||||| |||||| ||||||    
T  9884853 tggttggtgacattggtgacattggtcaaccacaatgtcacatgtggctttcttctttttctttcacaagattttt 9884928  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 6539720 - 6539637
Alignment:
Q  18 acttgggtgacat---ggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaa 98  Q
    |||||||||||||   ||||||||| ||| |||||||||  ||||| |||||||||| ||  ||||||||||||||| ||||||    
T  6539720 acttgggtgacattgtggttgatgatattggtgacattggtcaaccacaatgtcacatgtgactttcttctttttctttcacaa 6539637  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 15928204 - 15928145
Alignment:
Q  46 tgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 105  Q
    |||||||| |||||| |||||||||| ||  ||||||||||||||| |||||| ||||||    
T  15928204 tgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagattttt 15928145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 44938933 - 44938872
Alignment:
Q  37 tgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaa 98  Q
    |||||||||||||||||| ||||| |||||  ||||||  ||||||||||| ||| ||||||    
T  44938933 tgacattagtgacattgaacaaccacaatggtacaagtggctttcttctttctctttcacaa 44938872  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 50754751 - 50754811
Alignment:
Q  45 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 105  Q
    ||||||||| |||||| |||||||||| ||  ||||||||||||||| | |||| ||||||    
T  50754751 gtgacattggccaaccacaatgtcacatgtggctttcttctttttcttttacaagattttt 50754811  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 32008397 - 32008317
Alignment:
Q  18 acttgggtgacat---ggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctca 95  Q
    |||||||||||||   ||||| |||||||||||| |||||||||||  ||||| |||||| |||||||||||| |||||||    
T  32008397 acttgggtgacattgtggttggtgacattagtgatattgaccaaccaaaatgttacaagtgtctttcttctttctctctca 32008317  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 31846952 - 31846862
Alignment:
Q  18 acttgggtgacat---ggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 105  Q
    |||||||||||||   ||||| ||||||| |||| |||| |||||| |||||||||| ||  ||||||||||||||| |||||| ||||||    
T  31846952 acttgggtgacattgtggttggtgacattggtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagattttt 31846862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 53937919 - 53937987
Alignment:
Q  37 tgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 105  Q
    |||||||||||| ||||||||||| |||||||||||||| ||||||| | | ||| | |||||||||||    
T  53937919 tgacattagtgatattgaccaaccacaatgtcacaagtaactttcttatgtctcttttacaatattttt 53937987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 6607526 - 6607466
Alignment:
Q  45 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 105  Q
    ||||||||||||||||  ||||||||| ||  ||||||||||||||| |||||| ||||||    
T  6607526 gtgacattgaccaaccataatgtcacatgtggctttcttctttttctttcacaagattttt 6607466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 31012154 - 31012214
Alignment:
Q  45 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 105  Q
    |||||||||||||||| |||||||||| ||  |||| |||||||||| ||||||| |||||    
T  31012154 gtgacattgaccaaccacaatgtcacatgtgacttttttctttttctttcacaattttttt 31012214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 32224311 - 32224371
Alignment:
Q  45 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 105  Q
    |||||||||| ||||  |||||||||||||||||||||||||| | | | |||||||||||    
T  32224311 gtgacattgatcaactacaatgtcacaagtatctttcttctttctttttgacaatattttt 32224371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 54223580 - 54223622
Alignment:
Q  45 gtgacattgaccaacctcaatgtcacaagtatctttcttcttt 87  Q
    |||||||||||||||| ||||||||||| | ||||||||||||    
T  54223580 gtgacattgaccaaccacaatgtcacaaatgtctttcttcttt 54223622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 44023076 - 44023039
Alignment:
Q  37 tgacattagtgacattgaccaacctcaatgtcacaagt 74  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  44023076 tgacattagtgacattgaccaaccacaatgttacaagt 44023039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 9712983 - 9712943
Alignment:
Q  45 gtgacattgaccaacctcaatgtcacaagtatctttcttct 85  Q
    |||||||||||||||| |||||||||||||  |||||||||    
T  9712983 gtgacattgaccaaccacaatgtcacaagtggctttcttct 9712943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 54613030 - 54613084
Alignment:
Q  18 acttgggtgacat---ggttgatgacattagtgacattgaccaacctcaatgtca 69  Q
    |||||||||||||   ||||| ||||||||||| |||||||||||| ||||||||    
T  54613030 acttgggtgacattgtggttggtgacattagtggcattgaccaaccacaatgtca 54613084  T

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Target: scaffold0343 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 12338 - 12281
Alignment:
Q  45 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatt 102  Q
    |||||||||||||||| ||||||||||||| || ||||||||| ||| ||||||||||    
T  12338 gtgacattgaccaaccacaatgtcacaagtgtccttcttctttctctttcacaatatt 12281  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 29081611 - 29081668
Alignment:
Q  30 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttcttt 87  Q
    |||||| ||||||  |||||||||||||||| |||||||||||||| |||||||||||    
T  29081611 tggttggtgacatcggtgacattgaccaaccacaatgtcacaagtagctttcttcttt 29081668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 22894030 - 22893970
Alignment:
Q  45 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 105  Q
    |||||||||||||||| |||||||||||||  ||||||||||||||| | |||| ||||||    
T  22894030 gtgacattgaccaaccacaatgtcacaagtgactttcttctttttctttaacaagattttt 22893970  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 31342034 - 31342094
Alignment:
Q  45 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 105  Q
    ||||||||| |||||| |||||||||| ||| ||||||||||||||| |||||| ||||||    
T  31342034 gtgacattggccaaccacaatgtcacatgtagctttcttctttttctttcacaagattttt 31342094  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 11512414 - 11512474
Alignment:
Q  45 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 105  Q
    ||||||||| |||||| |||||||||| ||  ||||||||||||||| |||||| ||||||    
T  11512414 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagattttt 11512474  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 20286915 - 20286977
Alignment:
Q  29 atggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttct 91  Q
    ||||||| |||||||  |||||||| |||||| |||||||||| ||  |||||||||||||||    
T  20286915 atggttggtgacattgatgacattggccaaccacaatgtcacatgtggctttcttctttttct 20286977  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 25099369 - 25099321
Alignment:
Q  56 caacctcaatgtcacaagtatctttcttctttttctctcacaatatttt 104  Q
    ||||| ||||||||||||| |||||||||||||||| ||||||||||||    
T  25099369 caaccacaatgtcacaagtgtctttcttctttttctttcacaatatttt 25099321  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 17272726 - 17272786
Alignment:
Q  45 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 105  Q
    ||||||||| |||||| |||||||||| ||  ||||||||||||||| |||||| ||||||    
T  17272726 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagattttt 17272786  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 7212027 - 7211969
Alignment:
Q  47 gacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 105  Q
    ||||||| |||||| |||||||||| ||  ||||||||||||||| |||||| ||||||    
T  7212027 gacattggccaaccacaatgtcacatgtgactttcttctttttctttcacaagattttt 7211969  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 7211887 - 7211939
Alignment:
Q  45 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcaca 97  Q
    ||||||||| |||||| |||||||||| ||  ||||||||||||||| |||||    
T  7211887 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcaca 7211939  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 42772096 - 42772036
Alignment:
Q  45 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 105  Q
    |||||||||||||||| ||||||||||||| |||||||||||| | | ||| |||||||||    
T  42772096 gtgacattgaccaaccacaatgtcacaagtgtctttcttctttctttttcataatattttt 42772036  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 29385446 - 29385370
Alignment:
Q  18 acttgggtgacat---ggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttct 91  Q
    |||||||||||||   ||||| ||||||| ||||||||| |||||| |||||||||| ||  |||||||||||||||    
T  29385446 acttgggtgacattgtggttggtgacattggtgacattggccaaccacaatgtcacatgtggctttcttctttttct 29385370  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 1839983 - 1840056
Alignment:
Q  30 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattt 103  Q
    |||||| |||||||  |||||||| |||||| |||||||||| ||  ||||||||||||||| |||||| ||||    
T  1839983 tggttggtgacattgatgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagattt 1840056  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 7137655 - 7137721
Alignment:
Q  32 gttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaa 98  Q
    |||| ||| ||| |||||||||||||||| |||||||||||||  |||||||| || ||| ||||||    
T  7137655 gttggtgaaattggtgacattgaccaaccacaatgtcacaagtgactttcttcattctctttcacaa 7137721  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 9177976 - 9177916
Alignment:
Q  45 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 105  Q
    |||| |||| |||||| |||| ||||| ||  ||||||||||||||| |||||||||||||    
T  9177976 gtgatattggccaaccacaatatcacatgtgactttcttctttttctttcacaatattttt 9177916  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 507731 - 507803
Alignment:
Q  33 ttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 105  Q
    ||||||||||| |||||||||||||| | |||| | ||||||   |||||||||| ||| |||||| ||||||    
T  507731 ttgatgacattggtgacattgaccaatcacaatattacaagtggatttcttctttctctttcacaagattttt 507803  T

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