View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19400_low_27 (Length: 214)

Name: NF19400_low_27
Description: NF19400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19400_low_27
NF19400_low_27
[»] chr4 (3 HSPs)
chr4 (67-129)||(18747729-18747791)
chr4 (126-199)||(18747815-18747886)
chr4 (126-198)||(52367702-52367774)
[»] chr8 (2 HSPs)
chr8 (126-204)||(24252748-24252826)
chr8 (17-82)||(14330807-14330871)
[»] chr1 (1 HSPs)
chr1 (126-204)||(23247912-23247990)
[»] chr7 (3 HSPs)
chr7 (17-82)||(13937597-13937661)
chr7 (17-82)||(39286628-39286692)
chr7 (17-82)||(9987422-9987486)
[»] chr3 (2 HSPs)
chr3 (17-82)||(15259800-15259864)
chr3 (17-64)||(33590859-33590905)
[»] chr2 (1 HSPs)
chr2 (17-82)||(31140328-31140392)
[»] scaffold0094 (1 HSPs)
scaffold0094 (17-74)||(6814-6870)
[»] chr5 (2 HSPs)
chr5 (17-82)||(21724279-21724343)
chr5 (17-82)||(21804015-21804079)


Alignment Details
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 18747729 - 18747791
Alignment:
Q  67 tagtaatagcttgaaatcactgtattttagtagtgatcatagatgaaattgttattaattatt 129  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18747729 tagtaataccttgaaatcactgtattttagtagtgatcatagatgaaattgttattaattatt 18747791  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 18747815 - 18747886
Alignment:
Q  126 tatttgggcataaagcggacactatcatccaactgaagagaacttcaaagagtttttaagctttgttggagagt 199  Q
    ||||||||||||||| |||||||||||| |||||||| ||||||||  |||||||||||||||| |||||||||    
T  18747815 tatttgggcataaagtggacactatcattcaactgaacagaacttc--agagtttttaagctttcttggagagt 18747886  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 52367774 - 52367702
Alignment:
Q  126 tatttgggcataaagcggacactatcatccaactgaagagaacttcaaagagtttttaagctttgttggagag 198  Q
    ||||||| |||| || |||||||| |||||||| ||||||||||||||||| ||| |||||||| ||||||||    
T  52367774 tatttggccatacagtggacactaccatccaacagaagagaacttcaaagaatttataagctttcttggagag 52367702  T

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Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 24252826 - 24252748
Alignment:
Q  126 tatttgggcataaagcggacactatcatccaactgaagagaacttcaaagagtttttaagctttgttggagagtataat 204  Q
    ||||||| ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||    
T  24252826 tatttggccataaagtggatactatcatccaattgaagagaacttcaaagagtttttaagctttcttggagagcataat 24252748  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 14330871 - 14330807
Alignment:
Q  17 acatggttgatttgttgaagagaacacactattataatagagagagtggatagtaatagcttgaaa 82  Q
    ||||||||||||||||||  |||||||| |||||||||| |||||||| || |||||| |||||||    
T  14330871 acatggttgatttgttgacaagaacaca-tattataatatagagagtgaatggtaataccttgaaa 14330807  T

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Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 23247990 - 23247912
Alignment:
Q  126 tatttgggcataaagcggacactatcatccaactgaagagaacttcaaagagtttttaagctttgttggagagtataat 204  Q
    ||||||| ||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||    
T  23247990 tatttggccataaagtggatactatcatccaacttaagagaacttcaaagagtttttaagctttcttggagagcataat 23247912  T

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Target: chr7 (Bit Score: 54; Significance: 3e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 13937661 - 13937597
Alignment:
Q  17 acatggttgatttgttgaagagaacacactattataatagagagagtggatagtaatagcttgaaa 82  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  13937661 acatggttgatttgttgaagagaacacac-attataatagagagagtggatagtaataccttgaaa 13937597  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 39286692 - 39286628
Alignment:
Q  17 acatggttgatttgttgaagagaacacactattataatagagagagtggatagtaatagcttgaaa 82  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||    
T  39286692 acatggttgatttgttgaagagaacacac-attataatagagagagtgaatagtaataccttgaaa 39286628  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 9987486 - 9987422
Alignment:
Q  17 acatggttgatttgttgaagagaacacactattataatagagagagtggatagtaatagcttgaaa 82  Q
    ||||||||||||||||||| |||||| | ||||||||||||||||||| || |||||| |||||||    
T  9987486 acatggttgatttgttgaaaagaacata-tattataatagagagagtgaatggtaataccttgaaa 9987422  T

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Target: chr3 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 15259800 - 15259864
Alignment:
Q  17 acatggttgatttgttgaagagaacacactattataatagagagagtggatagtaatagcttgaaa 82  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||    
T  15259800 acatggttgatttgttgaagagaacacac-attataatagagagagtgaatagtaataccttgaaa 15259864  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 33590905 - 33590859
Alignment:
Q  17 acatggttgatttgttgaagagaacacactattataatagagagagtg 64  Q
    |||||||||||||||||||||||| ||| |||| ||||||||||||||    
T  33590905 acatggttgatttgttgaagagaataca-tattgtaatagagagagtg 33590859  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 31140392 - 31140328
Alignment:
Q  17 acatggttgatttgttgaagagaacacactattataatagagagagtggatagtaatagcttgaaa 82  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| |||||||    
T  31140392 acatggttgatttgttgaagagaacaccc-attataatagagagagtgggtagtaataccttgaaa 31140328  T

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Target: scaffold0094 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 6870 - 6814
Alignment:
Q  17 acatggttgatttgttgaagagaacacactattataatagagagagtggatagtaata 74  Q
    ||||||||||||| |||||||||||||| |||||||||| |||||||| || ||||||    
T  6870 acatggttgatttattgaagagaacaca-tattataatatagagagtgaatggtaata 6814  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 21724343 - 21724279
Alignment:
Q  17 acatggttgatttgttgaagagaacacactattataatagagagagtggatagtaatagcttgaaa 82  Q
    ||||||||||||||||||  |||||||| |||||||||| |||||||| || |||||| |||||||    
T  21724343 acatggttgatttgttgacaagaacaca-tattataatatagagagtgaatggtaataccttgaaa 21724279  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 21804079 - 21804015
Alignment:
Q  17 acatggttgatttgttgaagagaacacactattataatagagagagtggatagtaatagcttgaaa 82  Q
    ||||||||||||||||||  |||||||| |||||||||| |||||||| || |||||| |||||||    
T  21804079 acatggttgatttgttgacaagaacaca-tattataatatagagagtgaatggtaataccttgaaa 21804015  T

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