View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19400_low_4 (Length: 485)
Name: NF19400_low_4
Description: NF19400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19400_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Original strand, 33488764 - 33489229
Alignment:
| Q |
1 |
aaaccctcgattccaatacactctcgtcatctttcagagcttcctcatctttcaacgattttctctcagcagcagaagcacatgaagaagtggaagaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33488764 |
aaaccctcgattccaatacactctcgtcatctttcagagcttcctcatctttcaacgattttctctcagcagcagaagcacatgaagaagtggaagaaga |
33488863 |
T |
|
| Q |
101 |
gggaggatatgcagctaataaagctgtagcattccactcatggttcctaacaagttctgaaaatagaagtatcagtgaagccatattgcaattcaaaaat |
200 |
Q |
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| T |
33488864 |
gggaggatatgcagctaataaagctgtagcattccactcatggttcctaacaagttctgaaaatagaagtatcagtgaagccatattgcaattcaaaaat |
33488963 |
T |
|
| Q |
201 |
ttcaagagatttgtatatagtagttgatgttaaataaaagttgatggttataaagaaagaaaatttcaaaagttatatatagagaatgaaggaatataaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33488964 |
ttcaagagatttgtatatagtagttgatgttaaataaaagttgatggtt---aagaaagaaaatttcaaaagttatatatagagaatgaaggaatataaa |
33489060 |
T |
|
| Q |
301 |
agtggtcacagattgtgtgttttctgttagctgaaacagctgtttttgttttaacggtaaaacaaaatcagtggtttggtttctattgtttattgtagcg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33489061 |
agtggtcacagattgtgtgttttctgttagctgaaacagcagtttttgttttaacggtataacaaaatcagtggtttggtttctattgtttattgtagcg |
33489160 |
T |
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| Q |
401 |
gcaccgctgattttttctatgcgtgttgttgccacttgtattgtctaggaatacatggaaactcaaaac |
469 |
Q |
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| T |
33489161 |
gcaccgatgattttttctatgcgtgttgttgccacttgtattgtctaggaatacatggaaactcaaaac |
33489229 |
T |
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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 413 - 469
Target Start/End: Original strand, 44679602 - 44679656
Alignment:
| Q |
413 |
ttttctatgcgtgttgttgccacttgtattgtctaggaatacatggaaactcaaaac |
469 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44679602 |
ttttatatgcgtgttgttgccac--gtattgtctaggaatacatggaaactcaaaac |
44679656 |
T |
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