View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19400_low_7 (Length: 419)
Name: NF19400_low_7
Description: NF19400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19400_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 12 - 371
Target Start/End: Complemental strand, 1465761 - 1465402
Alignment:
| Q |
12 |
aaagggaattgaaccaaaaagggcttgatgttaaggaatttggttatgtgttattgtgacccctcccaaatttcgacagaccaaaagagcatttgagctc |
111 |
Q |
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| T |
1465761 |
aaagggaattgaaccaaaaagggcttgatgttaaggaatttggttatgtgttattgtgacccctcccaaatttcgacagaccaaaagagcatttgagctc |
1465662 |
T |
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| Q |
112 |
aagatggatcgttaattgtagctctgtttctcattttattaactttttagttgagtttaatcgaagataaacaaacgaggttgctcatttattagttggg |
211 |
Q |
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| T |
1465661 |
aagatggatcgttaattgtagctttgtttctcattttattaactttttagttgagtttaatcgaagataaacaaacgaggttgctcatttattagttggg |
1465562 |
T |
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| Q |
212 |
gtacctattagttagctccaatattttcattgatgtaccaacatggattccaccttcaggaaaggattatagaatcccatatttattactttttgttcaa |
311 |
Q |
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| T |
1465561 |
gtacctattagttagctccaatattttcattgatgtaccaacatggattccaccttcaggaaaggattatagaatcccatatttattactttttgttcaa |
1465462 |
T |
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| Q |
312 |
aaacattttgaaactaaatagatgccagcattagatgctaacatattacatgcatttctg |
371 |
Q |
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| T |
1465461 |
aaacattttgaaactaaatagatgccagcattagatgctaacatattacatgcatttctg |
1465402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 52389127 - 52389159
Alignment:
| Q |
224 |
tagctccaatattttcattgatgtaccaacatg |
256 |
Q |
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| T |
52389127 |
tagctccaatattttcattgatgtacctacatg |
52389159 |
T |
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