View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19400_low_9 (Length: 415)
Name: NF19400_low_9
Description: NF19400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19400_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 139 - 399
Target Start/End: Original strand, 41613505 - 41613766
Alignment:
| Q |
139 |
gagatgtaaattttttacattgactgtggatcaaaactaacctttt-atatgcatgtgtgcaggcgtataataccgattataggggtatgtttaacaatt |
237 |
Q |
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| T |
41613505 |
gagatgtaaattttttactttgactgtggatcaaaactaacctttttatatgcatgggtgcaggcgtataataccgattataggggtatgtttaacaatt |
41613604 |
T |
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| Q |
238 |
cttaacaataaactattgttacgggcctgtaaaggcgaacactctatttctagttgtaattcttctgtgaggaacttttagttgtaacccaacaattgaa |
337 |
Q |
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| T |
41613605 |
cttaaaaataaactattgttacgggcctacaaaggcgaacattctatttctagttgtaattcttctgtgaggaacttttagttgtaacccaacaattgaa |
41613704 |
T |
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| Q |
338 |
agtatacccctatatttttcaactaaggacgaaaataacatttgttatactgtgttatgttt |
399 |
Q |
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| T |
41613705 |
agtatacccctacattttccaactacggacgaaaataacatttgttatattgtgttatgttt |
41613766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 41613353 - 41613494
Alignment:
| Q |
13 |
aatatctaacccaaagaaattaaccctattggtaatcaatcataatagtttaattgttaaagatgttttccttaatttaatcacatctaccttaaaagtc |
112 |
Q |
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| T |
41613353 |
aatatctaacccaaagaaattaaccctattggtaatcaatcataatggtttaattgttaaagatgttttccttaatttaatcacatctaccttaaaagtc |
41613452 |
T |
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| Q |
113 |
gttcgaatcatagtttctgattagtcgagatgtaaatttttt |
154 |
Q |
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| T |
41613453 |
gtacaaatcatagtttctgattagttgagatgtaaatttttt |
41613494 |
T |
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