View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19401_high_11 (Length: 402)
Name: NF19401_high_11
Description: NF19401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19401_high_11 |
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| [»] scaffold0848 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 21545168 - 21544953
Alignment:
| Q |
1 |
cacgtgatgggtacgctgtcgtgcgattcgtgggtgctatatgtcgcaccatatagcacttctgaaagaccaaatgtatagtgcttaagtacacacaaaa |
100 |
Q |
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| T |
21545168 |
cacgtgatgggtacgctgtcgtgcgattcgtgggtgctatatgtcgcaccatatagcacttccgaaagaccaaat-tatagtgcttaagtacacacaaaa |
21545070 |
T |
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| Q |
101 |
gaacaaacatgacaaagagtaatatcaacttatttattattagaaaaagtgtttcttttacgcgtgcgcctaagtattgtgcatttggtcttgtgac--- |
197 |
Q |
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| T |
21545069 |
gaacaaacacgacaaagagtaatatcaacttatttattattagaaaaagtgtttcttttacgtgtgcgcctaagtattgtgcaattggtcttgtgaccat |
21544970 |
T |
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| Q |
198 |
-caacactaaatcgcaa |
213 |
Q |
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|||||||||||||||| |
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| T |
21544969 |
gcaacactaaatcgcaa |
21544953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 277 - 385
Target Start/End: Complemental strand, 21544889 - 21544781
Alignment:
| Q |
277 |
taattctgccggagattgttctctctattcattaccagtttttgttttaactcatctttgtctgaagaattcattctctaagtttgttgttaaagaattc |
376 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21544889 |
taattctgccggagattgttctctctattcattgccagtttttgttttaactcatctttgtctgaagaattcattctctaagtttgttgttaaagaattc |
21544790 |
T |
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| Q |
377 |
gattgaact |
385 |
Q |
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| T |
21544789 |
gattgaact |
21544781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 51138112 - 51138048
Alignment:
| Q |
1 |
cacgtgatgggtacgctgtcgtgcgattcgtgggtgctatatgtcgcaccatatagcacttctga |
65 |
Q |
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| T |
51138112 |
cacgtgatgggtacgttgccgtgcgattcgtgggtgctatatgtcgcaccatatagtacttctga |
51138048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 47393352 - 47393397
Alignment:
| Q |
18 |
gtcgtgcgattcgtgggtgctatatgtcgcaccatatagcacttct |
63 |
Q |
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| T |
47393352 |
gtcgtgcgtttcgtcgctgctatatgtcgcaccatatagcagttct |
47393397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0848 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0848
Description:
Target: scaffold0848; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 2492 - 2447
Alignment:
| Q |
18 |
gtcgtgcgattcgtgggtgctatatgtcgcaccatatagcacttct |
63 |
Q |
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| T |
2492 |
gtcgtgcgtttcgtcgctgctatatgtcgcaccatatagcagttct |
2447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 3980150 - 3980195
Alignment:
| Q |
18 |
gtcgtgcgattcgtgggtgctatatgtcgcaccatatagcacttct |
63 |
Q |
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| T |
3980150 |
gtcgtgcgtttcgtcgctgctatatgtcgcaccatatagcagttct |
3980195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 10177511 - 10177556
Alignment:
| Q |
18 |
gtcgtgcgattcgtgggtgctatatgtcgcaccatatagcacttct |
63 |
Q |
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| T |
10177511 |
gtcgtgcgtttcgtcgctgctatatgtcgcaccatatagcagttct |
10177556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 29749320 - 29749365
Alignment:
| Q |
18 |
gtcgtgcgattcgtgggtgctatatgtcgcaccatatagcacttct |
63 |
Q |
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| T |
29749320 |
gtcgtgcgtttcgtcgctgctatatgtcgcaccatatagcagttct |
29749365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 24791669 - 24791624
Alignment:
| Q |
18 |
gtcgtgcgattcgtgggtgctatatgtcgcaccatatagcacttct |
63 |
Q |
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| T |
24791669 |
gtcgtgcgtttcgtcgctgctatatgtcgcaccatatagcagttct |
24791624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 24815889 - 24815844
Alignment:
| Q |
18 |
gtcgtgcgattcgtgggtgctatatgtcgcaccatatagcacttct |
63 |
Q |
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|||||||| ||||| | |||||||||||||||||||||||| |||| |
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| T |
24815889 |
gtcgtgcgtttcgtcgctgctatatgtcgcaccatatagcagttct |
24815844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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