View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19401_high_12 (Length: 398)
Name: NF19401_high_12
Description: NF19401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19401_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 11 - 383
Target Start/End: Original strand, 22934212 - 22934584
Alignment:
| Q |
11 |
caaaggtttaagataataaagggtgttgctgcaggtcttttgtttctacatgaaggctatgagcaagtagtaatacatagagatgttaaggctagcaatg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
22934212 |
caaaggtttaagataataaagggtgttgctgcaggtcttttgtttctacatgaaggttatgagcaagtggtaatacatagagatgttaaggctagtaatg |
22934311 |
T |
|
| Q |
111 |
ttctgttagactgtgaactcaatggaagattaggtgatttcggattggcaagattgtatgaacatggttctaatcccggcacgacaagagtggtgggaac |
210 |
Q |
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|||| ||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22934312 |
ttctcttagattgcgaactcaatggaagattaggtgattttggattggcaaggttgtatgaacatggtgctaatcccggcacgacaagagtggtgggaac |
22934411 |
T |
|
| Q |
211 |
attaggctatttagcaccagaattgcctagaacaggaaaggcatctacaagctccgacgtttttgcattcggcgcgcttcttctcgaggttgcttgtgga |
310 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22934412 |
attaggctatttggcaccagaattgcctagaacaggaaaggcatctacaagctccgacgtttttgcattcggcgcgcttcttctcgaggttgcttgcgga |
22934511 |
T |
|
| Q |
311 |
agaaggcctattgaacctaaggcattacaagaagaactggtgttggtggaatgggtgtgggaaaggtacaaag |
383 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22934512 |
agaaggcctattgaacctaaggcattacaagaagaactggtgttggtggaatgggtgtgggaaaggtacaaag |
22934584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 383
Target Start/End: Complemental strand, 22921376 - 22921007
Alignment:
| Q |
14 |
aggtttaagataataaagggtgttgctgcaggtcttttgtttctacatgaaggctatgagcaagtagtaatacatagagatgttaaggctagcaatgttc |
113 |
Q |
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||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| | |
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| T |
22921376 |
aggtttaagataataaagggtgttgcttcaggtcttttgtatctacatgaaggctatgagcaagtggtaatccatagagatgttaaagctagcaatgtgc |
22921277 |
T |
|
| Q |
114 |
tgttagactgtgaactcaatggaagattaggtgatttcggattggcaagattgtatgaacatggttctaatcccggcacgacaagagtggtgggaacatt |
213 |
Q |
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|||| || | ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||||||| |
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| T |
22921276 |
tgttggattttgaactcaatggaagattaggcgatttcggattggcaaggttgtatgaacatggtgctaatccaggcacaacaagagtggtgggaacatt |
22921177 |
T |
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| Q |
214 |
aggctatttagcaccagaattgcctagaacaggaaaggcatctacaagctccgacgtttttgcattcggcgcgcttcttctcgaggttgcttgtggaaga |
313 |
Q |
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||||||||| ||||| || || |||||||||||| ||| | ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22921176 |
aggctatttggcaccggagttacctagaacaggacgagcaacaacaagctccgatgtttttgcattcggcgcgcttcttctcgaggttgtttgtggaaga |
22921077 |
T |
|
| Q |
314 |
aggcctattgaacctaaggcattacaagaagaactggtgttggtggaatgggtgtgggaaaggtacaaag |
383 |
Q |
| |
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|||||||||||||||||||||| |||||| || |||| |||||||| |||||||||||||||| ||||| |
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|
| T |
22921076 |
aggcctattgaacctaaggcatcacaagatgagttggtattggtggattgggtgtgggaaaggttcaaag |
22921007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 325
Target Start/End: Complemental strand, 22897191 - 22897154
Alignment:
| Q |
288 |
ttcttctcgaggttgcttgtggaagaaggcctattgaa |
325 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||| |
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| T |
22897191 |
ttcttctcgaggttgcttgtggtagaaggcctattgaa |
22897154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 383
Target Start/End: Complemental strand, 15627454 - 15627082
Alignment:
| Q |
11 |
caaaggtttaagataataaagggtgttgctgcaggtcttttgtttctacatgaaggctatgagcaagtagtaatacatagagatgttaaggctagcaatg |
110 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
15627454 |
caaaggttcaagataataaagggtgttgcttcaggccttttgtatctacatgaaggctatgagcaagttgtaatacacagagatgttaaggctagcaatg |
15627355 |
T |
|
| Q |
111 |
ttctgttagactgtgaactcaatggaagattaggtgatttcggattggcaagattgtatgaacatggttctaatcccggcacgacaagagtggtgggaac |
210 |
Q |
| |
|
|||| ||||||| ||||||||| ||||||||||||||||| || |||||||| || |||||||| ||| ||||||| || || ||||||||||||||||| |
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|
| T |
15627354 |
ttcttttagactttgaactcaacggaagattaggtgattttggtttggcaaggttatatgaacacggtgctaatccagggaccacaagagtggtgggaac |
15627255 |
T |
|
| Q |
211 |
attaggctatttagcaccagaattgcctagaacaggaaaggcatctacaagctccgacgtttttgcattcggcgcgcttcttctcgaggttgcttgtgga |
310 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||||| ||||| || || || |||||||||||||| || || ||||| || ||||| |||||||| |
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| T |
15627254 |
cttaggctatttggcaccggaattacctagaacaggaagagcatcaacgagttcagacgtttttgcatttggtgcacttctgcttgaggtagcttgtggg |
15627155 |
T |
|
| Q |
311 |
agaaggcctattgaacctaaggcattacaagaagaactggtgttggtggaatgggtgtgggaaaggtacaaag |
383 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| | ||||||||||| ||||||||||||| |||||||| |
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|
| T |
15627154 |
agaaggcctattgagcctaaggcattgcaagaagagttagtgttggtggattgggtgtgggaaaagtacaaag |
15627082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 98 - 221
Target Start/End: Complemental strand, 7285475 - 7285352
Alignment:
| Q |
98 |
aaggctagcaatgttctgttagactgtgaactcaatggaagattaggtgatttcggattggcaagattgtatgaacatggttctaatcccggcacgacaa |
197 |
Q |
| |
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|||||||||||||| || ||||| | |||||||||||||||||||| |||||| | | |||||| ||||||||||||||| ||||||| | || |||| |
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| T |
7285475 |
aaggctagcaatgtgcttttagattttgaactcaatggaagattagttgattttagttgggcaaggttgtatgaacatggtgctaatccagcaaccacaa |
7285376 |
T |
|
| Q |
198 |
gagtggtgggaacattaggctatt |
221 |
Q |
| |
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|||||||||||| |||||||||| |
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| T |
7285375 |
cagtggtgggaaccttaggctatt |
7285352 |
T |
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