View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19401_high_15 (Length: 370)

Name: NF19401_high_15
Description: NF19401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19401_high_15
NF19401_high_15
[»] chr3 (18 HSPs)
chr3 (10-370)||(9108743-9109106)
chr3 (18-206)||(8746911-8747099)
chr3 (10-203)||(8755530-8755723)
chr3 (69-209)||(9019296-9019436)
chr3 (79-209)||(9101246-9101376)
chr3 (18-209)||(9029070-9029261)
chr3 (31-209)||(9034590-9034768)
chr3 (69-201)||(8965284-8965416)
chr3 (31-184)||(9015393-9015546)
chr3 (75-209)||(9023464-9023598)
chr3 (69-172)||(8962569-8962672)
chr3 (69-187)||(9112115-9112233)
chr3 (69-182)||(8957129-8957242)
chr3 (69-201)||(8988353-8988485)
chr3 (18-182)||(9026111-9026275)
chr3 (305-340)||(9029411-9029446)
chr3 (305-342)||(9023740-9023777)
chr3 (309-341)||(9015719-9015751)


Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 10 - 370
Target Start/End: Original strand, 9108743 - 9109106
Alignment:
Q  10 catcatcaatgaagttttttgccttctttttcgtcgttatctttgctgcctccctggtgtcggctcaagacctcagtccctcattggctccagcatcagg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9108743 catcatcaatgaagttttttgccttctttttcgtcgttatctttgctgcctccctggtgtcggctcaagacctcagtccctcattggctccagcatcagg 9108842  T
Q  110 tcctgatgtcggagctgccggatctgttacaaattcagtggccatgatcggagcttcaattgtcttgtcaatgcttgcactcttgaagaactaaaaacat 209  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9108843 tcctgatgtcggagctgccggatctgttacaagttcagtggccatgatcggagcttcaattgtcttgtcaatgcttgcactcttgaagaactaaaaacat 9108942  T
Q  210 agtcgttatttttgttttattctgtgctagtgatgattattaagtgatgatctatgtatacttgag---agcgagagaataatttaatttcaagagtgtt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||   |||||||||||||||||||||||||||||||    
T  9108943 agtcgttatttttgttttattctgtgctagtgatgattattaattgatgatctatatatacttgagatcagcgagagaataatttaatttcaagagtgtt 9109042  T
Q  307 tattttcacatttcattatttattgtaggtgttaagtcacaacaaaaaaggattttatcatcct 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9109043 tattttcacatttcattatttattgtaggtgttaagtcacaacaaaaaaggattttatcatcct 9109106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 8746911 - 8747099
Alignment:
Q  18 atgaagttttttgccttctttttcgtcgttatctttgctgcctccctggtgtcggctcaagacctcagtccctcattggctccagcatcaggtcctgatg 117  Q
    |||||||| ||  |||||||||||||| | ||||| || ||| ||||||  || || ||||||||||||||||| |||||||||||| ||||||||||||    
T  8746911 atgaagttcttctccttctttttcgtcttcatcttcgccgccaccctggcctctgcccaagacctcagtccctcgttggctccagcaccaggtcctgatg 8747010  T
Q  118 tcggagctgccggatctgttacaaattcagtggccatgatcggagcttcaattgtcttgtcaatgcttgcactcttgaagaactaaaaa 206  Q
    | |||||||  ||||||||||||||||||||||| ||||| |||| ||||||||| ||||||||||| ||  |||| ||| ||||||||    
T  8747011 ttggagctgttggatctgttacaaattcagtggctatgattggagtttcaattgtgttgtcaatgctcgccatcttcaagcactaaaaa 8747099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 8755530 - 8755723
Alignment:
Q  10 catcatcaatgaagttttttgccttctttttcgtcgttatctttgctgcctccctggtgtcggctcaagacctcagtccctcattggctccagcatcagg 109  Q
    ||||||||||||||||||| |||||||||||||| ||| |||| || ||  || |||  ||||||||||||||||||||||| |||||||| ||| |||     
T  8755530 catcatcaatgaagtttttcgccttctttttcgttgttgtcttcgcagcagccgtggcttcggctcaagacctcagtccctcgttggctccggcaccaga 8755629  T
Q  110 tcctgatgtcggagctgccggatctgttacaaattcagtggccatgatcggagcttcaattgtcttgtcaatgcttgcactcttgaagaactaa 203  Q
    |||||||| ||| ||||| |||||||||||||||||||| || ||||| |||||||| ||| | ||||| ||||| ||  |||| |||||||||    
T  8755630 tcctgatgccggtgctgctggatctgttacaaattcagttgctatgattggagcttcgattattttgtctatgctcgccatcttcaagaactaa 8755723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 69 - 209
Target Start/End: Original strand, 9019296 - 9019436
Alignment:
Q  69 tcggctcaagacctcagtccctcattggctccagcatcaggtcctgatgtcggagctgccggatctgttacaaattcagtggccatgatcggagcttcaa 168  Q
    |||||||||||||| ||||||||||  ||||| ||| ||||||||||||| || |||   ||||||||||| | |||||| || ||||||||||||||||    
T  9019296 tcggctcaagaccttagtccctcatccgctccggcaccaggtcctgatgttggggcttgtggatctgttacgagttcagttgctatgatcggagcttcaa 9019395  T
Q  169 ttgtcttgtcaatgcttgcactcttgaagaactaaaaacat 209  Q
    |||| ||||||||||||||  |||||||||||| |||||||    
T  9019396 ttgtgttgtcaatgcttgccatcttgaagaactgaaaacat 9019436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 9101246 - 9101376
Alignment:
Q  79 acctcagtccctcattggctccagcatcaggtcctgatgtcggagctgccggatctgttacaaattcagtggccatgatcggagcttcaattgtcttgtc 178  Q
    ||||||||||||| |||||||||||| |||| |||||||  |||||||| || |||||||||| ||||||||| |||||||||| ||||||||| |||||    
T  9101246 acctcagtccctcgttggctccagcaccaggccctgatgctggagctgctggttctgttacaagttcagtggctatgatcggagtttcaattgtattgtc 9101345  T
Q  179 aatgcttgcactcttgaagaactaaaaacat 209  Q
    |||||| ||  |||| ||| |||||||||||    
T  9101346 aatgctcgccatctttaagcactaaaaacat 9101376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 9029070 - 9029261
Alignment:
Q  18 atgaagttttttgccttctttttcgtcgttatctttgctgcctccctggtgtcggctcaagacctcagtccctcattggctccagcatcaggtcctgatg 117  Q
    |||||||| ||  |||||||||| ||| | ||||| || ||| || |||  || || |||||||| ||||| || |||||||||||| ||||||||||||    
T  9029070 atgaagttcttctccttctttttggtcatcatcttcgccgccaccgtggcctctgcccaagaccttagtccttcgttggctccagcaccaggtcctgatg 9029169  T
Q  118 tcggagctgccggatctgttacaaattcagtggccatgatcggagcttcaattgtcttgtcaatgcttgcactcttgaagaactaaaaacat 209  Q
      |||||||| |||||| |||||| ||||| ||| |||||||||| ||||||||| ||||||||||| ||  |||| ||| |||||||||||    
T  9029170 ctggagctgctggatctattacaagttcagcggctatgatcggagtttcaattgtgttgtcaatgctcgccatcttcaagcactaaaaacat 9029261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 31 - 209
Target Start/End: Original strand, 9034590 - 9034768
Alignment:
Q  31 ccttctttttcgtcgttatctttgctgcctccctggtgtcggctcaagacctcagtccctcattggctccagcatcaggtcctgatgtcggagctgccgg 130  Q
    |||||||||||||||  ||||| ||||||  | |||  || || |||||||| ||||| || |||||||| ||| ||||||||||||  |||||||| ||    
T  9034590 ccttctttttcgtcgccatcttcgctgccatcgtggcctctgcccaagaccttagtccttcgttggctccggcaccaggtcctgatgctggagctgctgg 9034689  T
Q  131 atctgttacaaattcagtggccatgatcggagcttcaattgtcttgtcaatgcttgcactcttgaagaactaaaaacat 209  Q
    ||||||| ||| ||| ||||| |||||||||| ||||||||| ||||||||||| ||  |||| ||| |||||||||||    
T  9034690 atctgttgcaagttcggtggctatgatcggagtttcaattgtgttgtcaatgctcgccatcttcaagcactaaaaacat 9034768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 69 - 201
Target Start/End: Original strand, 8965284 - 8965416
Alignment:
Q  69 tcggctcaagacctcagtccctcattggctccagcatcaggtcctgatgtcggagctgccggatctgttacaaattcagtggccatgatcggagcttcaa 168  Q
    ||||| |||||||| ||||| || |||||||||||| || ||||||| |  |||||||||||||||||||||| |||  |||| ||||||||||||||||    
T  8965284 tcggcccaagaccttagtccgtcgttggctccagcaccaagtcctgacgctggagctgccggatctgttacaagttctatggcaatgatcggagcttcaa 8965383  T
Q  169 ttgtcttgtcaatgcttgcactcttgaagaact 201  Q
    ||||  |||||||||| ||| |||| |||||||    
T  8965384 ttgtgctgtcaatgctcgcaatcttcaagaact 8965416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 31 - 184
Target Start/End: Original strand, 9015393 - 9015546
Alignment:
Q  31 ccttctttttcgtcgttatctttgctgcctccctggtgtcggctcaagacctcagtccctcattggctccagcatcaggtcctgatgtcggagctgccgg 130  Q
    |||||||||||||||  || || ||||||||  | |  ||||||||||||||||| ||||| ||| |||| ||| |||||||||||| |||||| || ||    
T  9015393 ccttctttttcgtcgccatgttggctgcctctatcgcctcggctcaagacctcagcccctcgttgtctccggcaccaggtcctgatgccggagcagctgg 9015492  T
Q  131 atctgttacaaattcagtggccatgatcggagcttcaattgtcttgtcaatgct 184  Q
    || |||||||||||||||| | ||| | |||| ||||||||| |||||||||||    
T  9015493 atatgttacaaattcagtgactatggttggagtttcaattgtattgtcaatgct 9015546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 75 - 209
Target Start/End: Original strand, 9023464 - 9023598
Alignment:
Q  75 caagacctcagtccctcattggctccagcatcaggtcctgatgtcggagctgccggatctgttacaaattcagtggccatgatcggagcttcaattgtct 174  Q
    |||||||| |||||||| |||||||| ||| ||||||||||||  |||||||| ||||||||||||| ||||||||| ||| |||||  |||  |||| |    
T  9023464 caagaccttagtccctcgttggctccggcaccaggtcctgatgctggagctgctggatctgttacaagttcagtggctatggtcggaatttcggttgtat 9023563  T
Q  175 tgtcaatgcttgcactcttgaagaactaaaaacat 209  Q
    |||||||||| ||  |||| ||| |||||||||||    
T  9023564 tgtcaatgctcgccatcttcaagcactaaaaacat 9023598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 69 - 172
Target Start/End: Original strand, 8962569 - 8962672
Alignment:
Q  69 tcggctcaagacctcagtccctcattggctccagcatcaggtcctgatgtcggagctgccggatctgttacaaattcagtggccatgatcggagcttcaa 168  Q
    ||||| |||||||| |||||||| || ||||||||| ||||||||||||  |||| ||||||||||||| ||  ||| ||||| ||||||||||||||||    
T  8962569 tcggcccaagaccttagtccctcgttagctccagcaccaggtcctgatgctggagttgccggatctgttgcaggttctgtggctatgatcggagcttcaa 8962668  T
Q  169 ttgt 172  Q
    ||||    
T  8962669 ttgt 8962672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 69 - 187
Target Start/End: Original strand, 9112115 - 9112233
Alignment:
Q  69 tcggctcaagacctcagtccctcattggctccagcatcaggtcctgatgtcggagctgccggatctgttacaaattcagtggccatgatcggagcttcaa 168  Q
    ||||| ||||||||||||||||| |||||||| ||| |||  ||||||  ||||||||  |||||| |||||||| ||||||| ||||| |||||||  |    
T  9112115 tcggcccaagacctcagtccctcgttggctccggcaccagcacctgataccggagctgttggatctcttacaaatccagtggctatgatgggagctttga 9112214  T
Q  169 ttgtcttgtcaatgcttgc 187  Q
    |||| ||||||||||||||    
T  9112215 ttgtgttgtcaatgcttgc 9112233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 182
Target Start/End: Original strand, 8957129 - 8957242
Alignment:
Q  69 tcggctcaagacctcagtccctcattggctccagcatcaggtcctgatgtcggagctgccggatctgttacaaattcagtggccatgatcggagcttcaa 168  Q
    ||||| |||||||| ||||| || || ||||||||| | |||||||| |  ||||||||||||| |||||||| ||| ||||| ||||||||||||||||    
T  8957129 tcggcccaagaccttagtccgtcgttagctccagcacccggtcctgacgctggagctgccggatttgttacaagttctgtggctatgatcggagcttcaa 8957228  T
Q  169 ttgtcttgtcaatg 182  Q
    ||||  ||||||||    
T  8957229 ttgtgctgtcaatg 8957242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 69 - 201
Target Start/End: Original strand, 8988353 - 8988485
Alignment:
Q  69 tcggctcaagacctcagtccctcattggctccagcatcaggtcctgatgtcggagctgccggatctgttacaaattcagtggccatgatcggagcttcaa 168  Q
    ||||| |||||||| |||||||| ||| |||||||| |||||||||| || ||||||||| | |||| ||||| ||  ||||| ||||||||||||||||    
T  8988353 tcggcccaagaccttagtccctcgttgtctccagcaccaggtcctgacgttggagctgccagttctgctacaagttatgtggctatgatcggagcttcaa 8988452  T
Q  169 ttgtcttgtcaatgcttgcactcttgaagaact 201  Q
    | ||  |||||||||| ||  |||| |||||||    
T  8988453 tcgtactgtcaatgctcgctatcttcaagaact 8988485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 9026111 - 9026275
Alignment:
Q  18 atgaagttttttgccttctttttcgtcgttatctttgctgcctccctggtgtcggctcaagacctcagtccctcattggctccagcatcaggtcctgatg 117  Q
    |||||||| ||  |||||||||| ||| | ||||| || ||| || |||  || || ||||| || ||||| || |||||||||||| ||||| ||||||    
T  9026111 atgaagttcttctccttctttttggtcatcatcttcgccgccaccgtggcctctgcccaagatcttagtccttcgttggctccagcaccaggttctgatg 9026210  T
Q  118 tcggagctgccggatctgttacaaattcagtggccatgatcggagcttcaattgtcttgtcaatg 182  Q
      |||| ||| ||||||||||||| ||||||||| |||||||||| |||| |||| |||||||||    
T  9026211 ctggagttgctggatctgttacaagttcagtggcaatgatcggagtttcagttgtattgtcaatg 9026275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 340
Target Start/End: Original strand, 9029411 - 9029446
Alignment:
Q  305 tttattttcacatttcattatttattgtaggtgtta 340  Q
    |||||||| |||||||||||||||||||||||||||    
T  9029411 tttatttttacatttcattatttattgtaggtgtta 9029446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 342
Target Start/End: Original strand, 9023740 - 9023777
Alignment:
Q  305 tttattttcacatttcattatttattgtaggtgttaag 342  Q
    |||||||| | |||||||||||||||||||||||||||    
T  9023740 tttatttttatatttcattatttattgtaggtgttaag 9023777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 341
Target Start/End: Original strand, 9015719 - 9015751
Alignment:
Q  309 ttttcacatttcattatttattgtaggtgttaa 341  Q
    |||| ||||||||||||||||||||||||||||    
T  9015719 tttttacatttcattatttattgtaggtgttaa 9015751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University