View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19401_high_16 (Length: 361)

Name: NF19401_high_16
Description: NF19401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19401_high_16
NF19401_high_16
[»] chr1 (1 HSPs)
chr1 (20-307)||(45316666-45316953)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 20 - 307
Target Start/End: Complemental strand, 45316953 - 45316666
Alignment:
Q  20 tgagacacaataaatatgattatatgaacatctcttccaataaaagtttggtcacgttgatcatattgtgggagactagaaggattgcattagaaattcc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45316953 tgagacacaataaatatgattatatgaacatctcttccaataaaagtttggtcacgttgatcatattgtgggagactagaaggattgcattagaaattcc 45316854  T
Q  120 agccacttgcaagttaccatggatgcatttaacaaccaattcaatatatgtttctttgatcaaagttcttggtttcttgtagaggaggtctccggggagt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45316853 agccacttgcaagttaccatggatgcatttaacaaccaattcaatatatgtttctttgatcaaagttcttggtttcttgtagaggaggtctccggggagt 45316754  T
Q  220 tcctgcgtagaggattactaaaatgatttaaacataggaagttgaagagaaaagatcagttgaacattccaaatagatgtgtgtggat 307  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45316753 tcctgcctagaggattactaaaatgatttaaacataggaagttgaagagaaaatatcagttgaacattccaaatagatgtgtgtggat 45316666  T

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