View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19401_high_17 (Length: 353)
Name: NF19401_high_17
Description: NF19401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19401_high_17 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 353
Target Start/End: Complemental strand, 28654802 - 28654468
Alignment:
| Q |
17 |
tgatggtgttcacatacttgaaatttctcatcccaaaacttcttaccgatgtctgctccgataccacaccgcgccacgttgctaaaagaaaggatgcatc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28654802 |
tgatggtgttcacatacttgaaatttctcatcccaaaacttcttaccgatgtctgctccgataccacaccgcgccacgttgctaaaagaaaggatgcatc |
28654703 |
T |
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| Q |
117 |
gcatgactgcatatatatatgtatcattattagctttttcaatttgaaacgatgtaactgttctggtaattatgtaatacacacactcacattgaccatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||| |
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| T |
28654702 |
gcatgactgcatatatatatgtatcattattagctttt-caatttgaaacgatgttactgttgtg-taattatgtaatacacacactcacattgaccatg |
28654605 |
T |
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| Q |
217 |
caatcgtggaagagatttcgaagccacgaaatggctgtgcttccttgattatacagttcagtgacttgctgcttgattatctcttcggctcttgggcagc |
316 |
Q |
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| T |
28654604 |
caatcatggaagagatttcgaagccacgaaatggctgtgcttccttgattatatagttcagtgacttgctgcttgattatctcttcggctcttgggcagc |
28654505 |
T |
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| Q |
317 |
tggtagagtagtagttcagctggagctggcttttccc |
353 |
Q |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
28654504 |
tggtggagtagtagttcagctggagctggcttttccc |
28654468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 353
Target Start/End: Complemental strand, 28635521 - 28635172
Alignment:
| Q |
17 |
tgatggtgttcacatacttgaaatttctcatcccaaaacttcttaccgatgtctgctccgataccacaccgcgccacgttgctaaaagaaaggatgcatc |
116 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||| | ||||||||| |
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| T |
28635521 |
tgatggtattcacatacttgaaatttctcatcccaaaacttctcaccgatgtctgctccgataccacaccatgcaccgttgctaaaagcagggatgcatc |
28635422 |
T |
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| Q |
117 |
gcatgactgcatatatatatgtatcattattagct--ttttcaatttgaaacgatgtaac--tgttctggtaattatgt--------aatacacacactc |
204 |
Q |
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|||||||||||| ||||| ||||||||||| | | ||||||||||||| |||| |||| || ||||||||| ||| | |||| |
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| T |
28635421 |
acatgactgcatacatata--catcattattagttgccgattaatttgaaacgatataactttgttgtgttaattatgttatctatatatatttatactc |
28635324 |
T |
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| Q |
205 |
acattgaccatgcaatcgtggaagagatttcgaagccacgaaatggctgtgcttcc---ttgattatacagttcagtgacttgctgcttgattatctctt |
301 |
Q |
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|| ||||| ||||||| |||||||||||||||| ||| |||||||||||| |||| || ||||| |||||||||||||| || ||||||||||||| |
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| T |
28635323 |
acgttgactgtgcaatcatggaagagatttcgaacccaggaaatggctgtgtttccatgctggttatatagttcagtgacttgttgtttgattatctctt |
28635224 |
T |
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| Q |
302 |
cggctcttgggcagctggtagagtagtagttcagctggagctggcttttccc |
353 |
Q |
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| ||| ||||||||||| | ||||||||||||||||||||||| |||||||| |
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| T |
28635223 |
ctgcttttgggcagctgttggagtagtagttcagctggagctgacttttccc |
28635172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 28605353 - 28605243
Alignment:
| Q |
17 |
tgatggtgttcacatacttgaaatttctcatcccaaaacttcttaccgatgtctgctccgataccacaccgcgccacgttgctaaaagaaaggatgcatc |
116 |
Q |
| |
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|||||||| ||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||| ||| || ||| | ||||| | ||||||||| |
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| T |
28605353 |
tgatggtgctcacatacttgaagtttctcatcccaaaacttctctccgctgtctgctccgataccacgccgtgcaccgtctccaaaagcagggatgcatc |
28605254 |
T |
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| Q |
117 |
gcatgactgca |
127 |
Q |
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|||||||||| |
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| T |
28605253 |
acatgactgca |
28605243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 353
Target Start/End: Complemental strand, 28604949 - 28604794
Alignment:
| Q |
201 |
actcacattgaccatgcaatcgtggaagagatttcgaagccacgaaatggctgtgcttccttgatt---atacagttcagtgacttgctgcttgattatc |
297 |
Q |
| |
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|||||| ||||| |||||||| ||||||||||||| || ||||||||| |||||| |||| || || ||||| |||| ||||||| |||||||| ||| |
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| T |
28604949 |
actcaccttgactatgcaatcatggaagagatttctaacccacgaaattgctgtgtttccatgcttgttatacaattcattgacttgttgcttgatgatc |
28604850 |
T |
|
| Q |
298 |
tcttcggctcttgggcagctggtagagtagtagttcagctggagctggcttttccc |
353 |
Q |
| |
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||||| ||| |||||||||| | ||||||||||| | ||| || |||||| |||| |
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| T |
28604849 |
tcttctgcttttgggcagctcttggagtagtagtttacctgtagttggcttatccc |
28604794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 353
Target Start/End: Complemental strand, 28663017 - 28662862
Alignment:
| Q |
201 |
actcacattgaccatgcaatcgtggaagagatttcgaagccacgaaatggctgtgcttccttgat---tatacagttcagtgacttgctgcttgattatc |
297 |
Q |
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|||||| | ||| |||||||| ||||||||||||| || |||||||| |||||| |||| || | ||||||||||| |||||| |||||||| ||| |
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| T |
28663017 |
actcacctcgactatgcaatcatggaagagatttctaacccacgaaaccgctgtgtttccatgctcgttatacagttcaatgactttttgcttgatgatc |
28662918 |
T |
|
| Q |
298 |
tcttcggctcttgggcagctggtagagtagtagttcagctggagctggcttttccc |
353 |
Q |
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||||| ||| |||||||||| | ||||||||||||| || |||||||||||||| |
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| T |
28662917 |
tcttctgcttttgggcagctcttggagtagtagttcaattgtagctggcttttccc |
28662862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 28663204 - 28663095
Alignment:
| Q |
17 |
tgatggtgttcacatacttgaaatttctcatcccaaaacttcttaccgatgtctgctccgataccacaccgcgccacgttgctaaaagaaaggatgcatc |
116 |
Q |
| |
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||||||| || ||||||||||| |||| |||||| ||||||| | |||||||| |||||||| ||| ||| | || | ||||||| | ||||||||| |
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| T |
28663204 |
tgatggtttttacatacttgaagtttcgcatcccggaacttctctctgatgtctgttccgatactacatcgcccaccgattctaaaagcagggatgcatc |
28663105 |
T |
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| Q |
117 |
gcatgactgc |
126 |
Q |
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||||||||| |
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| T |
28663104 |
acatgactgc |
28663095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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