View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19401_high_24 (Length: 288)
Name: NF19401_high_24
Description: NF19401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19401_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 14 - 269
Target Start/End: Complemental strand, 48044452 - 48044197
Alignment:
| Q |
14 |
gcacagaggagtgaaagcatcttaagcttgggtctcacacatgacacaacctaattgatcaactgcattctcacaaggggtcaaatgtttgtcgaacagg |
113 |
Q |
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| T |
48044452 |
gcacagaggagtgaaagcatcttaagcttgggtctcacacatgacacaacctaattgatcaactgcattctcacaaggggtcaaatgtttgtcgaacagg |
48044353 |
T |
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| Q |
114 |
aaaggttggagaaacataggtcccatgaacaatcttgtttcaagcctcaccttactagctattaattgactcggagaattattcaaatcaaattagcgtg |
213 |
Q |
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| T |
48044352 |
aaaggttggagaaacataggtcccatgaacaatcttgtttcaagcctcaccttactagctattaattgactctgagaattattcaaatcaaataagcgtg |
48044253 |
T |
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| Q |
214 |
acctatctccctctctatgttgatgtggcattttgccatgttatttaccagcaaat |
269 |
Q |
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| T |
48044252 |
acctatctccctctctatgttgatgtggcattttgccatgttatttaccagcaaat |
48044197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 48051958 - 48051892
Alignment:
| Q |
203 |
aaattagcgtgacctatctccctctctatgttgatgtggcattttgccatgttatttaccagcaaat |
269 |
Q |
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| T |
48051958 |
aaattagcatgatctatctccctctatatgctgatgtggcacactgccatgttattttccagcaaat |
48051892 |
T |
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