View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19401_high_26 (Length: 274)
Name: NF19401_high_26
Description: NF19401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19401_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 5 - 252
Target Start/End: Complemental strand, 37146572 - 37146327
Alignment:
| Q |
5 |
caaaattaagccaaagagtaaaatcaatatcggaattgagaactttttggagagcttaaactctgttttctctagttctaacattggaaaagttgttgtt |
104 |
Q |
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| T |
37146572 |
caaaattaagccaaagagtaaaatcaatatcggaattgagaactttttggaaagcttaaactctgttttctctaattctaacattggaaaagttgttgtt |
37146473 |
T |
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| Q |
105 |
caagttaaggtttagtgcccaaataccatatatgcatgataataatgtctgtattatgagcacaatatatgtc-agccatattttccttataattagtcg |
203 |
Q |
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| T |
37146472 |
caagttaaggcttagtacccaaataccatatttgcatgataataatgt---tattatgagtacaatatatgtcgaaccatattttcattataattagtcg |
37146376 |
T |
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| Q |
204 |
tttgtttcaaactttcctctatgagtggatatgtaataattttaaggtt |
252 |
Q |
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| T |
37146375 |
tttgtttcaaacattcctctatgaatggatatgtaataattttaaggtt |
37146327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 37158793 - 37158653
Alignment:
| Q |
10 |
ttaagccaaagagtaaaatcaatatcggaattgagaactttttggagagcttaaactctgttttctctagttctaacattggaaaagttgttgttcaagt |
109 |
Q |
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| T |
37158793 |
ttaagtcaaagaataaaataaatatcggaattgagggatttctggagagcttgaactctttattctctagctccaacattggaaaagttgttgttcaagt |
37158694 |
T |
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| Q |
110 |
taaggtttagtgcccaaataccatatatgcatgataataat |
150 |
Q |
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| T |
37158693 |
taaggcatagtgtccaaatactatatatgcttgatcataat |
37158653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 37152602 - 37152481
Alignment:
| Q |
9 |
attaagccaaagagtaaaatcaatatcggaattgagaactttttggagagcttaaactctgttttctctagttctaacattggaaaagttgttgttcaag |
108 |
Q |
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| T |
37152602 |
attaagtcaaagaataaaataaatatcggaattgattgctttttggagagcttgaattccttattctctagctccaacattggaaaagttgttgttcaag |
37152503 |
T |
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| Q |
109 |
ttaaggtttagtgcccaaatac |
130 |
Q |
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| T |
37152502 |
ttaaggcctagtgtccaaatac |
37152481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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