View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19401_high_33 (Length: 235)
Name: NF19401_high_33
Description: NF19401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19401_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 21641120 - 21640918
Alignment:
| Q |
17 |
ggatggaatgaaatgaaagtgatcatacgtacattaatgaatataggtttgttataagataaattataagagagaaaacaatcaatcaaagcctttgctt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21641120 |
ggatggaatgaaatgaaagtgatcatacgtacattaatgagtataggtttgttaaaagataaattataagagagaaaacaatcaatcaaagcctttgctt |
21641021 |
T |
|
| Q |
117 |
cttcagcaaaacaaggttacacgagatacctaaaactatagtcacatatatttgatacgtatcacaattaatgaaacctaaattacaaggaacattatat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21641020 |
cttcagcaaaacaaggttacacgagatacctaaaactataggcgcatatatttgatacgtaccacaattaatgaaacctaaattacaaggaacattatat |
21640921 |
T |
|
| Q |
217 |
ata |
219 |
Q |
| |
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||| |
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| T |
21640920 |
ata |
21640918 |
T |
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