View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19401_high_35 (Length: 224)
Name: NF19401_high_35
Description: NF19401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19401_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 9142192 - 9142383
Alignment:
| Q |
18 |
ggacactatattctaccatcattcttgtctgctagaattctgtttgggataacattttttattgcattactgatatacaaatggcgaaaaagacattggt |
117 |
Q |
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| T |
9142192 |
ggacactatattctaccatcactcttgtctgctagaattctgttcggaataacattttttattgcactacttatatacaaatggcgaaaaagacattggt |
9142291 |
T |
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| Q |
118 |
caatgtatgagtgtattgaaatatatctacaacaaaataacctcatgcccattggatattcatacagagaaattaagaaaatggccagaggt |
209 |
Q |
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| T |
9142292 |
caatgtatgaatgtattgaaatatatctacaacaaaacaaccttatgcccattggatattcatacagagaaattaagaaaatggctagaggt |
9142383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 9081860 - 9082044
Alignment:
| Q |
18 |
ggacactatattctaccatcattcttgtctgctagaattctgtttgggataacattttttattgcattactgatatacaaatggcgaaaaagacattggt |
117 |
Q |
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| T |
9081860 |
ggacattatgttctaccatcaattctgttggctagatttctatttgggatatcattttttatcgcactactgatatacaaatggcgaaaaagacattggt |
9081959 |
T |
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| Q |
118 |
caatgtatgagtgtattgaaatatatctacaacaaaataacctcatgcccattggatattcatacagagaaattaagaaaatggc |
202 |
Q |
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| T |
9081960 |
caatgtatgaatgtattgaaatatatctacaacataacaacctcatgcccattggatattcatacaaagaaatcaagaaaatggc |
9082044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 9057354 - 9057160
Alignment:
| Q |
14 |
cataggacactatattctaccatcattcttgtctgctagaattctgtttgggataacattttttattgcattactgatatacaaatggcgaaaaagacat |
113 |
Q |
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| T |
9057354 |
catagggcactatgttctaccattatttttggggactagatttctctttgggataactttttttactgcgttgctgatatacaagtggctaaaaagacat |
9057255 |
T |
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| Q |
114 |
tggtcaatgtatgagtgtattgaaatatatctacaacaaaataacctcatgcccattggatattcatacagagaaattaagaaaatggccagagg |
208 |
Q |
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| T |
9057254 |
tggtcaatgtatgaatgtatcgaaatatatctacaacaaaacaacctcatgcccattggatattcatacagagaaattaagaaaatggctagagg |
9057160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 9096123 - 9096314
Alignment:
| Q |
14 |
cataggacactatattctaccatcattcttgtctgctagaattctgtttgggataacattttttattgcattactgatatacaaatggcgaaaaagacat |
113 |
Q |
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| T |
9096123 |
cataggacattatattctaccatcattattggctgctaaacttctgtttgggataacatttttcattgcactactgatatacaaatggcgaaaaaggcat |
9096222 |
T |
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| Q |
114 |
tggtcaatgtatgagtgtattgaaatatatctacaacaaaataacct---catgcccattggatattcatacagagaaattaagaaaatggc |
202 |
Q |
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| T |
9096223 |
tggtcaatgtatgaatgtattgaactatatctacaacaacaaaacaattccatgcctattggatattcctacaaagaaattaagaagatggc |
9096314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 60 - 209
Target Start/End: Original strand, 9104351 - 9104503
Alignment:
| Q |
60 |
tttgggataacattttttattgcattactgatatacaaatggcgaaaaagacattggtcaatgtatgagtgtattgaaatatatctacaacaaaataacc |
159 |
Q |
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| T |
9104351 |
tttgggatagcattttttattgcattgttgatatacaaatggcgaaaaagacattggtcaatgtatgaatgtattgaactatatctacaacaacaaaaca |
9104450 |
T |
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| Q |
160 |
t---catgcccattggatattcatacagagaaattaagaaaatggccagaggt |
209 |
Q |
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| T |
9104451 |
attccatgcctattggatattcatacaaagaaattaagaaaatggctagaggt |
9104503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 8873385 - 8873580
Alignment:
| Q |
17 |
aggacactatattctaccatcattcttgtctgctagaattctgtttgggataacattttttattgcattactgatatacaaatggcgaaaaagacattgg |
116 |
Q |
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| T |
8873385 |
aggacactatgtcctaccgtccttctttgcagctagatttctgtttgggatgacattatttattgccttgttgatatacaaatggaagaaaagacattta |
8873484 |
T |
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| Q |
117 |
tcaatgtatgagtgtattgaaatatatct---acaacaaaataacctcatgcccattggatattcatacagagaaattaagaaaatggccagaggt |
209 |
Q |
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| T |
8873485 |
tcaatgtttgattatattgaaatatatcttcaacaagaaaacaatctcttgcccattggatattcatacaaagaaattaagaaaatggctagaggt |
8873580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 60 - 202
Target Start/End: Complemental strand, 9000413 - 9000268
Alignment:
| Q |
60 |
tttgggataacattttttattgcattactgatatacaaatggcgaaaaagacattggtcaatgtatgagtgtattgaaatatatctaca---acaaaata |
156 |
Q |
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| T |
9000413 |
tttgggatgacattgtttattgcattgctgatatacaaatggaaaagaagtcatttgtcaacgtatgaatgtattgaaatatatctacaacaacaaaaca |
9000314 |
T |
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| Q |
157 |
acctcatgcccattggatattcatacagagaaattaagaaaatggc |
202 |
Q |
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|||| |||||||| |||| ||||||| |||||||||||||||||| |
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| T |
9000313 |
acctgatgcccatcagatactcatacaaagaaattaagaaaatggc |
9000268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 8965306 - 8965110
Alignment:
| Q |
16 |
taggacactatattctaccatcattcttgt-ctgctagaattctgtttgggataacattttttattgcattactgatatacaaatggcgaaaaagacatt |
114 |
Q |
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||||||||||| |||||||||||| |||| ||||||||||||| || ||||| || || || |||| || ||||||||||||| | |||||||||| |
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| T |
8965306 |
taggacactatgttctaccatcata-ttgtgctgctagaattctcttcgggatgacgttattctttgccttgtcgatatacaaatggaggaaaagacatt |
8965208 |
T |
|
| Q |
115 |
ggtcaatgtatgagtgtattgaaatatatctacaacaaaataacctcatg---cccattggatattcatacagagaaattaagaaaatggccagaggt |
209 |
Q |
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||||||||| || ||||||||||| |||||||||||| | ||| | || ||||| |||||||||||| |||||||| |||||||| |||||| |
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| T |
8965207 |
tgtcaatgtacgaatgtattgaaatgtatctacaacaacaaaacaccttgattcccatcagatattcatacaatgaaattaaaaaaatggctagaggt |
8965110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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