View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19401_high_5 (Length: 452)
Name: NF19401_high_5
Description: NF19401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19401_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 398
Target Start/End: Original strand, 2772279 - 2772661
Alignment:
| Q |
15 |
cagagaaatgccaagaaaaaagtgagaaagattaacgtctccgggaaaaccaaagcactcccttgacgtcaacaggagcaatgtcgctaaaaaagagtgg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2772279 |
cagagaaatgccaagaaaaaagtgagaaagattaacgtcttcgggaaa-ccaaagcactcccttgacgtcaacaggagcaatgtcgttaaaaaagagtgg |
2772377 |
T |
|
| Q |
115 |
cggtctgctgccaccattcgccgtcttaaaatgtacagaaccaaacccgtacgtaacgggaagggaaaagtcttacacaacgagtttcagtccaaggatc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2772378 |
cggtctgctgccaccattcgccgtcttaaaatgtacagaaccaaacccgtacgtaacagaaagggaaaagtcttacacaacgagtttcagtccaaggatc |
2772477 |
T |
|
| Q |
215 |
tccccagcacaagaattcaacctgatcctcgttggttcggttagtccaatttgacatcataaaaattcaatgtgtccaagtacatctatattattactat |
314 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2772478 |
tccccagcacaagaattcaatctgatcctcgttggttcggttagtccaatttgacctcataaaaattcaatgtgtccaagtacatctatattattactat |
2772577 |
T |
|
| Q |
315 |
ctttttgcttatatttcatttaggagggtgttattaattatgaatcttcaaattcaacacgtgagtttcattgtttctattttg |
398 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2772578 |
ccttttgcttatatttcatttaggagggtgttattaattatgaatcttcaaattcaacacgtgagtttcattgtttctattttg |
2772661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 33493392 - 33493247
Alignment:
| Q |
18 |
agaaatgccaagaaaaaagtgagaaagattaacgtctccgggaaaaccaaagcactcccttgacgtcaacaggagcaatgtcgctaaaaaagagtggcgg |
117 |
Q |
| |
|
|||||| | ||||| || ||||||||| |||| ||||| || |||||| |||||||| || ||||||||| ||||||||||||||| |||| ||| || |
|
|
| T |
33493392 |
agaaattcgaagaagaatgtgagaaaggttaatgtctctgg-aaaacctaagcactctctcgacgtcaaccggagcaatgtcgctacaaaaaagtcacgt |
33493294 |
T |
|
| Q |
118 |
tctgctgccaccattcgccgtcttaaaatgtacagaaccaaacccgt |
164 |
Q |
| |
|
|||||||| || |||||||||| |||||||||| || ||||||||| |
|
|
| T |
33493293 |
tctgctgcaactgttcgccgtctaaaaatgtacaaaagcaaacccgt |
33493247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University