View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19401_high_7 (Length: 418)
Name: NF19401_high_7
Description: NF19401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19401_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 37005057 - 37004765
Alignment:
| Q |
1 |
gtttgatatcagttctggtacccatatgcttgaactttgcttcaaaatgttcatggagaaattctttgcctgcatgaagtttactatatgctttagaact |
100 |
Q |
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| T |
37005057 |
gtttgatatcagttctggtacccatatgcttgaactttgcttcaaaatgttcatggagaaactctttgcctgcatgaagtttactatatgttttagaact |
37004958 |
T |
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| Q |
101 |
actacatgatcaaaataaatgctaattgttgtgtgatgaatctatttatatcactgtatttctattgtggattaggcctctcaatattatgaaatatttt |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37004957 |
actaattgatcaaaataaatgctaattgttgtgtgatgaatctatttatatcactgtatttctattgtggattaggcctctcaatattatgaaatatttt |
37004858 |
T |
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| Q |
201 |
atgaactgataattaaaattggtcaaaccaagcacgttttcgatattttcatttcttaaaaatgagaaattaaaacaaacattttctaactct |
293 |
Q |
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| T |
37004857 |
atgaactgataattaaaattggtcaaaccaagcacgttttcgatattttcatttcttaaaaatgagaaattaaaacaaacattttctaactct |
37004765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 352 - 402
Target Start/End: Complemental strand, 37004706 - 37004656
Alignment:
| Q |
352 |
gaccctagagtttttacgtcaactcatactcaagttgagggattatcattt |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37004706 |
gaccctagagtttttacgtcaactcatactcaagttgagggattgtcattt |
37004656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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