View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19401_high_9 (Length: 413)

Name: NF19401_high_9
Description: NF19401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19401_high_9
NF19401_high_9
[»] chr2 (17 HSPs)
chr2 (74-398)||(29765558-29765886)
chr2 (300-398)||(29750017-29750118)
chr2 (187-289)||(44089433-44089534)
chr2 (160-289)||(7079375-7079503)
chr2 (176-289)||(41824268-41824379)
chr2 (149-289)||(13333441-13333580)
chr2 (197-289)||(4860281-4860371)
chr2 (149-289)||(25270850-25270989)
chr2 (149-289)||(41056882-41057021)
chr2 (162-285)||(44587654-44587776)
chr2 (184-262)||(10041576-10041653)
chr2 (251-289)||(11342065-11342103)
chr2 (162-247)||(27331807-27331892)
chr2 (252-289)||(29819866-29819903)
chr2 (197-249)||(10218906-10218958)
chr2 (162-222)||(14928118-14928178)
chr2 (249-289)||(18009625-18009665)
[»] chr5 (11 HSPs)
chr5 (161-289)||(1098634-1098760)
chr5 (186-268)||(14631031-14631112)
chr5 (184-262)||(36409667-36409744)
chr5 (186-237)||(39785119-39785170)
chr5 (184-274)||(12922394-12922483)
chr5 (186-268)||(30489124-30489205)
chr5 (252-289)||(71266-71303)
chr5 (162-287)||(892560-892684)
chr5 (188-289)||(11607319-11607419)
chr5 (234-287)||(15311937-15311989)
chr5 (149-289)||(17625648-17625786)
[»] chr4 (13 HSPs)
chr4 (162-289)||(19934645-19934771)
chr4 (162-289)||(29006842-29006968)
chr4 (162-289)||(54164820-54164946)
chr4 (149-289)||(38381983-38382122)
chr4 (184-282)||(12596690-12596787)
chr4 (162-285)||(40952355-40952477)
chr4 (184-234)||(42013175-42013225)
chr4 (184-262)||(46462414-46462491)
chr4 (187-289)||(48806288-48806389)
chr4 (160-289)||(5535721-5535848)
chr4 (160-289)||(19934645-19934773)
chr4 (184-289)||(31933654-31933758)
chr4 (207-288)||(48402463-48402543)
[»] chr6 (7 HSPs)
chr6 (162-289)||(14173397-14173522)
chr6 (162-289)||(14177933-14178058)
chr6 (185-289)||(16120995-16121098)
chr6 (201-289)||(6032973-6033060)
chr6 (178-289)||(14218204-14218314)
chr6 (199-262)||(29168529-29168591)
chr6 (176-289)||(17773522-17773634)
[»] chr8 (5 HSPs)
chr8 (162-267)||(13964426-13964530)
chr8 (162-289)||(28882671-28882797)
chr8 (226-289)||(24052899-24052961)
chr8 (201-252)||(35781273-35781324)
chr8 (185-289)||(24820305-24820407)
[»] chr1 (18 HSPs)
chr1 (184-289)||(19175617-19175721)
chr1 (162-289)||(34953903-34954029)
chr1 (249-289)||(9676059-9676099)
chr1 (201-285)||(44673932-44674014)
chr1 (149-289)||(46906868-46907007)
chr1 (176-262)||(6735732-6735817)
chr1 (252-289)||(2122665-2122702)
chr1 (160-225)||(10256786-10256851)
chr1 (160-285)||(23394695-23394819)
chr1 (252-289)||(38834618-38834655)
chr1 (209-262)||(50144193-50144245)
chr1 (185-289)||(1409056-1409159)
chr1 (187-287)||(3549788-3549887)
chr1 (210-282)||(21444218-21444289)
chr1 (190-262)||(22558898-22558969)
chr1 (201-289)||(39393019-39393105)
chr1 (212-284)||(43318065-43318136)
chr1 (221-285)||(43603638-43603701)
[»] chr7 (14 HSPs)
chr7 (198-289)||(2456343-2456433)
chr7 (201-287)||(6250646-6250732)
chr7 (183-249)||(27163193-27163259)
chr7 (162-287)||(12274816-12274940)
chr7 (176-289)||(43813132-43813244)
chr7 (183-267)||(30486613-30486696)
chr7 (201-287)||(6182962-6183048)
chr7 (175-234)||(34564988-34565047)
chr7 (162-289)||(37491280-37491406)
chr7 (227-289)||(27165172-27165233)
chr7 (207-289)||(31319568-31319649)
chr7 (162-287)||(34750337-34750462)
chr7 (186-252)||(40332310-40332376)
chr7 (212-289)||(18654603-18654679)
[»] chr3 (6 HSPs)
chr3 (207-287)||(54690833-54690912)
chr3 (207-245)||(30686258-30686296)
chr3 (162-248)||(42681187-42681273)
chr3 (209-262)||(54726109-54726161)
chr3 (149-289)||(21217173-21217312)
chr3 (149-289)||(42787610-42787748)
[»] scaffold1266 (1 HSPs)
scaffold1266 (184-262)||(164-241)
[»] scaffold0635 (1 HSPs)
scaffold0635 (184-262)||(5417-5494)
[»] scaffold0263 (1 HSPs)
scaffold0263 (184-262)||(19822-19899)
[»] scaffold0020 (1 HSPs)
scaffold0020 (252-289)||(139303-139340)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 74 - 398
Target Start/End: Complemental strand, 29765886 - 29765558
Alignment:
Q  74 agtactgaagcggatatcaatctgtaaaatataaaaatgaaaaac-tccaaaatgcgtccctttcttcatattgacatacaccatatgatcacaattata 172  Q
    |||||||||| |||||| ||| ||||||| ||| ||||||||||  | ||||||| ||||||||||| || |||| ||||||||| |  |||||||||||    
T  29765886 agtactgaagtggatattaatatgtaaaacatacaaatgaaaaaaattcaaaatgtgtccctttctttattttgatatacaccatctcgtcacaattata 29765787  T
Q  173 acaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagatt 272  Q
    || ||||||| |||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||    
T  29765786 accaaaaatcaactttttagattcattgaataagtgatatatgcggtctatattataaaccatatatatcatttattcaaataaatctaagaaatatatt 29765687  T
Q  273 tttgcttataatagtgagcgatttgaccaaaaacttttttgtccctccatatttcacattaaatat---gttatctctagtatc-ttcataattaaatac 368  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||   ||||||||||| ||| ||||||||||||||     
T  29765686 tttgcttataatagtgatcgatttgaccaaaaact-ttttgtccctccatatttcacattaaatatgtcgttatctctagcatctttcataattaaatat 29765588  T
Q  369 tgtcactgaatcttgtactttgatgtttaa 398  Q
    || |||| ||||||||||||||||||||||    
T  29765587 tgccactaaatcttgtactttgatgtttaa 29765558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 398
Target Start/End: Complemental strand, 29750118 - 29750017
Alignment:
Q  300 caaaaacttttttgtccctccatatttcacattaaatatgt---tatctctagtatcttcataattaaatactgtcactgaatcttgtactttgatgttt 396  Q
    ||||||| ||||||||||||||| |||| |||| ||||| |   |||||| |  |||||||||||||||||  |||| |||||||||||||||||| |||    
T  29750118 caaaaacctttttgtccctccatgtttctcatttaatatataggtatctccaacatcttcataattaaatatcgtcattgaatcttgtactttgattttt 29750019  T
Q  397 aa 398  Q
    ||    
T  29750018 aa 29750017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 44089534 - 44089433
Alignment:
Q  187 ttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagatttttgcttataatag 286  Q
    ||||||||| ||| ||||  |||| |||||||||||||||||| ||||| || || |||||||| ||||||| ||| | ||  |||||||||||||||||    
T  44089534 ttttaaattcattcaatacatgatgtatgtggtctatattatagaccatgtacatcatttattc-aatgaatataaaagatgtatttttgcttataatag 44089436  T
Q  287 tga 289  Q
    |||    
T  44089435 tga 44089433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 289
Target Start/End: Original strand, 7079375 - 7079503
Alignment:
Q  160 gatcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatc 259  Q
    |||||| |||||||  ||||||| || ||||||||| ||  | ||| |||||||||||||||||| |  | |||||||| || ||| ||| |||||||||    
T  7079375 gatcactattataagcaaaaatcaacattttaaattcatccattaaatgatatatgtggtctataattaagaccatatacatcattaatt-aaatgaatc 7079473  T
Q  260 taagaaatagatttttgcttataatagtga 289  Q
    ||| | |||  |||||||||||||||||||    
T  7079474 taaaatatatgtttttgcttataatagtga 7079503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 289
Target Start/End: Complemental strand, 41824379 - 41824268
Alignment:
Q  176 aaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagattttt 275  Q
    |||||| |||||||||  || ||| ||||| |||| |||||||||||||| |||||| | ||| || ||||||| || ||||||||| ||||  ||||||    
T  41824379 aaaaattgactttttaggttcattcaataaatgatgtatgtggtctatat-ataaactacatacataatttattgaa-tgaatctaaaaaatgaattttt 41824282  T
Q  276 gcttataatagtga 289  Q
    ||||||||||||||    
T  41824281 gcttataatagtga 41824268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 289
Target Start/End: Original strand, 13333441 - 13333580
Alignment:
Q  149 atacaccatatgatcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttat 248  Q
    ||||||||| ||||||| |||||||  ||||||| || ||||| ||  ||| | ||| |||| ||||| || | |||||||||||  ||| || |||||     
T  13333441 atacaccatctgatcactattataagcaaaaatcaacgttttagatacattcattaaatgatgtatgtagtttgtattataaaccgcatacatcatttaa 13333540  T
Q  249 tcaaatgaatctaagaaatagatttttgcttataatagtga 289  Q
    |||| ||||||||| |  |||||||||||||||||||||||    
T  13333541 tcaa-tgaatctaaaatgtagatttttgcttataatagtga 13333580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 289
Target Start/End: Original strand, 4860281 - 4860371
Alignment:
Q  197 attgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagatttttgcttataatagtga 289  Q
    ||||||||| |||| ||| |||||||||| |||||||| ||| |||| | ||| || | ||||||| ||||||||||||||||||| ||||||    
T  4860281 attgaataactgatgtatctggtctatat-ataaaccagatacattagtcatttaa-taaatctaaaaaatagatttttgcttatattagtga 4860371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 289
Target Start/End: Original strand, 25270850 - 25270989
Alignment:
Q  149 atacaccatatgatcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttat 248  Q
    ||||||||| || |||| |||||||  ||||||| || ||||| ||  ||| | ||| |||| ||||| |||| |||||||||||  ||| || |||||     
T  25270850 atacaccatctggtcactattataagcaaaaatcaacgttttagatacattcattaaatgatgtatgtagtctgtattataaaccgcatacatcatttaa 25270949  T
Q  249 tcaaatgaatctaagaaatagatttttgcttataatagtga 289  Q
    | || ||||||||| |  |||||||||||||||||||||||    
T  25270950 tgaa-tgaatctaaaatgtagatttttgcttataatagtga 25270989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 289
Target Start/End: Original strand, 41056882 - 41057021
Alignment:
Q  149 atacaccatatgatcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttat 248  Q
    ||||||||| ||||||| |||||||  ||||||| |  ||||| ||  ||| | ||| |||| ||||| |||| |||||||||||  ||| || |||||     
T  41056882 atacaccatctgatcactattataagcaaaaatcaatgttttagatacattcattaaatgatgtatgtagtctgtattataaaccgcatacatcatttaa 41056981  T
Q  249 tcaaatgaatctaagaaatagatttttgcttataatagtga 289  Q
    | || ||||||||| |  |||||||||||||||||||||||    
T  41056982 tgaa-tgaatctaaaatgtagatttttgcttataatagtga 41057021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 285
Target Start/End: Complemental strand, 44587776 - 44587654
Alignment:
Q  162 tcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatcta 261  Q
    |||| |||||||  ||||| | |||||||| ||| ||||||| |||||| |||||||||   | |||| |||| ||| || |||||||||| |||| |||    
T  44587776 tcactattataagcaaaaaactactttttagattcattgaatgagtgatgtatgtggtcatcaatatagaccacatacatcatttattcaa-tgaaccta 44587678  T
Q  262 agaaatagatttttgcttataata 285  Q
    | ||||||  ||||||||||||||    
T  44587677 aaaaatagtattttgcttataata 44587654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 10041653 - 10041576
Alignment:
Q  184 actttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaa 262  Q
    ||||||||| || ||| ||| | |||| ||||||||||||||||||||||| ||| || ||| ||| ||||||||||||    
T  10041653 actttttaagttcattcaattaatgatgtatgtggtctatattataaaccacatacatcattaatt-aaatgaatctaa 10041576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 289
Target Start/End: Original strand, 11342065 - 11342103
Alignment:
Q  251 aaatgaatctaagaaatagatttttgcttataatagtga 289  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  11342065 aaatgaatctaaaatatagatttttgcttataatagtga 11342103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 27331892 - 27331807
Alignment:
Q  162 tcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattattta 247  Q
    |||| |||||||  ||||||| || ||||| ||| ||| ||| | |||| ||||| |||| |||||||||| ||||||||||||||    
T  27331892 tcactattataagcaaaaatcaacattttagattcattcaattaatgatgtatgtagtctttattataaacaatatatattattta 27331807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Original strand, 29819866 - 29819903
Alignment:
Q  252 aatgaatctaagaaatagatttttgcttataatagtga 289  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  29819866 aatgaatctaaaacatagatttttgcttataatagtga 29819903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 10218906 - 10218958
Alignment:
Q  197 attgaataagtgatatatgtggtctatattataaaccatatatattatttatt 249  Q
    ||||||||| ||||||||||||  ||||||||| ||||| || ||||||||||    
T  10218906 attgaataaatgatatatgtggattatattatagaccatgtacattatttatt 10218958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 14928118 - 14928178
Alignment:
Q  162 tcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtcta 222  Q
    ||||||||||||  ||||||| || |||||| || |||||||||| ||| |||||||||||    
T  14928118 tcacaattataaataaaaatctacattttaagtttattgaataagggatgtatgtggtcta 14928178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 18009665 - 18009625
Alignment:
Q  249 tcaaatgaatctaagaaatagatttttgcttataatagtga 289  Q
    |||||||||||||| ||||||||||||  ||||||||||||    
T  18009665 tcaaatgaatctaaaaaatagatttttatttataatagtga 18009625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 289
Target Start/End: Original strand, 1098634 - 1098760
Alignment:
Q  161 atcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatct 260  Q
    ||||| |||||||  |||| | ||||||||| ||| ||| ||||| |||| |||||||||||||| ||| || | ||| |||||||||| ||||||||||    
T  1098634 atcactattataagtaaaagttgactttttagattcattcaataaatgatgtatgtggtctatat-atagactacatacattatttatt-aaatgaatct 1098731  T
Q  261 aagaaatagatttttgcttataatagtga 289  Q
    || ||||| | ||||||||||||||||||    
T  1098732 aaaaaataaacttttgcttataatagtga 1098760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 268
Target Start/End: Complemental strand, 14631112 - 14631031
Alignment:
Q  186 tttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaata 268  Q
    |||||| ||| |||||||||||||| |||||||| |||||| || || | ||||||||||||||| ||||||||||| |||||    
T  14631112 tttttagatttattgaataagtgatgtatgtggtatatattctagactacatatattatttattc-aatgaatctaaaaaata 14631031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 36409667 - 36409744
Alignment:
Q  184 actttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaa 262  Q
    |||||||| ||| ||||||||| ||||||||||||||||||| ||| | || ||| || |||||||| |||||||||||    
T  36409667 actttttagatttattgaataaatgatatatgtggtctatatcatatatcacatacatcatttattc-aatgaatctaa 36409744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 39785170 - 39785119
Alignment:
Q  186 tttttaaattgattgaataagtgatatatgtggtctatattataaaccatat 237  Q
    |||||||||| ||| ||||| |||| ||||||||||||||||||||| ||||    
T  39785170 tttttaaattcattcaataaatgatgtatgtggtctatattataaactatat 39785119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 274
Target Start/End: Complemental strand, 12922483 - 12922394
Alignment:
Q  184 actttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagatttt 274  Q
    |||||||||||| ||| ||||| |||||||| ||||||||||||| || || ||| || |||||||  ||||||| ||| |||| ||||||    
T  12922483 actttttaaattcattcaataaatgatatatttggtctatattattaaacaaatacatcatttatt-gaatgaatataaaaaattgatttt 12922394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 268
Target Start/End: Complemental strand, 30489205 - 30489124
Alignment:
Q  186 tttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaata 268  Q
    |||||||||| ||| ||| | |||||||||||||||||||||| ||| ||||| || ||| ||| ||||||| |||| |||||    
T  30489205 tttttaaattcattcaattaatgatatatgtggtctatattatgaactatatacataattaatt-aaatgaacctaaaaaata 30489124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Complemental strand, 71303 - 71266
Alignment:
Q  252 aatgaatctaagaaatagatttttgcttataatagtga 289  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  71303 aatgaatctaaaatatagatttttgcttataatagtga 71266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 892684 - 892560
Alignment:
Q  162 tcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatcta 261  Q
    ||||||||||||  ||||||  |||||| ||||| |||||||||  ||| ||| | || |||| |||| | || ||| |||| |||||||| ||||||||    
T  892684 tcacaattataagcaaaaatttacttttaaaattcattgaataacggatgtatctagtatatagtatagaacaaatacattaattattcaa-tgaatcta 892586  T
Q  262 agaaatagatttttgcttataatagt 287  Q
    | || |  ||||||||||||||||||    
T  892585 aaaagtgaatttttgcttataatagt 892560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 289
Target Start/End: Original strand, 11607319 - 11607419
Alignment:
Q  188 tttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagatttttgcttataatagt 287  Q
    |||||||| ||| ||||| | || ||| |||| | |||||||||||| |||||||| |||||  ||| ||||||| ||||| ||||||| ||||||| ||    
T  11607319 tttaaatttatttaataactaatgtatttggtttgtattataaaccaaatatattaattatt-gaataaatctaacaaataaatttttgtttataattgt 11607417  T
Q  288 ga 289  Q
    ||    
T  11607418 ga 11607419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 15311937 - 15311989
Alignment:
Q  234 atatatattatttattcaaatgaatctaagaaatagatttttgcttataatagt 287  Q
    ||||| || ||||||| |||||||||||| |||||||||||| |||||||||||    
T  15311937 atatacatcatttatt-aaatgaatctaaaaaatagatttttccttataatagt 15311989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 289
Target Start/End: Complemental strand, 17625786 - 17625648
Alignment:
Q  149 atacaccatatgatcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttat 248  Q
    ||||||||| ||||||| |||||||  ||||||| || ||||| ||  ||| | ||| |||| ||||| |||| |||||||||||  ||| || |||||     
T  17625786 atacaccatctgatcactattataagcaaaaatcaacgttttagatacattcattaaatgatgtatgtagtctgtattataaaccgcatacatcatttaa 17625687  T
Q  249 tcaaatgaatctaagaaatagatttttgcttataatagtga 289  Q
    |  ||||||||||| |  ||||||||| |||||||||||||    
T  17625686 t-gaatgaatctaaaatgtagattttt-cttataatagtga 17625648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 162 - 289
Target Start/End: Original strand, 19934645 - 19934771
Alignment:
Q  162 tcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatcta 261  Q
    |||| |||||||  |||| || |||||||| ||| ||| ||||| |||| |||||||||||| | ||  |||| ||| || ||||||| || ||||||||    
T  19934645 tcactattataagcaaaattccactttttagattcattcaataaatgatgtatgtggtctatttaatggaccacatacatcatttattgaa-tgaatcta 19934743  T
Q  262 agaaatagatttttgcttataatagtga 289  Q
    | ||||||||||||||||||||||||||    
T  19934744 aaaaatagatttttgcttataatagtga 19934771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 162 - 289
Target Start/End: Complemental strand, 29006968 - 29006842
Alignment:
Q  162 tcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatcta 261  Q
    |||| |||||||  |||| || |||||||||||| ||| ||||| |||| |||||||||||| | ||  | || ||| || |||||||  ||||||||||    
T  29006968 tcactattataagcaaaattccactttttaaattcattcaataaatgatgtatgtggtctatttaatggatcacatacatcatttatt-gaatgaatcta 29006870  T
Q  262 agaaatagatttttgcttataatagtga 289  Q
    | ||||||||||||||||||||||||||    
T  29006869 aaaaatagatttttgcttataatagtga 29006842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 162 - 289
Target Start/End: Original strand, 54164820 - 54164946
Alignment:
Q  162 tcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatcta 261  Q
    |||| |||||||  |||| || |||||||| ||| ||| ||||| |||| |||||||||||| | ||  |||| ||| || ||||||| || ||||||||    
T  54164820 tcactattataagcaaaattccactttttagattcattcaataaatgatgtatgtggtctatttaatggaccacatacatcatttattgaa-tgaatcta 54164918  T
Q  262 agaaatagatttttgcttataatagtga 289  Q
    | ||||||||||||||||||||||||||    
T  54164919 aaaaatagatttttgcttataatagtga 54164946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 289
Target Start/End: Complemental strand, 38382122 - 38381983
Alignment:
Q  149 atacaccatatgatcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttat 248  Q
    ||||||||| || |||| |||||||  ||||||| || ||||| ||  ||| | ||| |||| ||||| |||| |||||||||||| ||| || |||||     
T  38382122 atacaccatctggtcactattataagcaaaaatcaacgttttagatacattcattaaatgatgtatgtagtctgtattataaaccacatacatcatttaa 38382023  T
Q  249 tcaaatgaatctaagaaatagatttttgcttataatagtga 289  Q
    || ||||||||||| |  || ||||||||||||||||||||    
T  38382022 tc-aatgaatctaaaatgtaaatttttgcttataatagtga 38381983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 282
Target Start/End: Complemental strand, 12596787 - 12596690
Alignment:
Q  184 actttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagatttttgcttata 282  Q
    ||||||||  || ||| ||||| ||||||||||||||||| | |||  ||| ||| |||||||||| |||||||| ||| ||||| |||||||||||||    
T  12596787 actttttaggttcattcaataaatgatatatgtggtctatttaatagtccacatacattatttatt-aaatgaatttaaaaaataaatttttgcttata 12596690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 285
Target Start/End: Original strand, 40952355 - 40952477
Alignment:
Q  162 tcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatcta 261  Q
    |||| |||||||  || |||| || ||||| ||| ||| | ||| |||||||||||||||||| || ||| |||||| || ||||| |  ||||||||||    
T  40952355 tcactattataagcaataatcaacattttagattcattcattaaatgatatatgtggtctataataaaaatcatatacat-atttaattgaatgaatcta 40952453  T
Q  262 agaaatagatttttgcttataata 285  Q
    | | ||| ||||||||||||||||    
T  40952454 aaatataaatttttgcttataata 40952477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 42013175 - 42013225
Alignment:
Q  184 actttttaaattgattgaataagtgatatatgtggtctatattataaacca 234  Q
    |||||||||||| ||| ||| | |||| |||||||||||||||||||||||    
T  42013175 actttttaaattcattcaattaatgatgtatgtggtctatattataaacca 42013225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 46462491 - 46462414
Alignment:
Q  184 actttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaa 262  Q
    ||||||||  || ||||||||| |||| ||||| |||| |||||||||||||||| || |||||||  |||||||||||    
T  46462491 actttttaggttcattgaataaatgatgtatgtagtctttattataaaccatatacatcatttatt-taatgaatctaa 46462414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 48806288 - 48806389
Alignment:
Q  187 ttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagatttttgcttataatag 286  Q
    |||||| || ||| ||||| |||| |||| ||||||||||| | |||| ||||||||||||||  |||||||||||||  |  |||||| |||||||| |    
T  48806288 ttttaagtttattcaataaatgatgtatgcggtctatattaaagaccacatatattatttatt-gaatgaatctaagatgtcaatttttacttataatgg 48806386  T
Q  287 tga 289  Q
    |||    
T  48806387 tga 48806389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 289
Target Start/End: Complemental strand, 5535848 - 5535721
Alignment:
Q  160 gatcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatc 259  Q
    |||||| |||||||  |||||| ||||| |||  || ||| ||||| |||| ||||||||||||| ||||||| | ||| || |||||||  ||||||||    
T  5535848 gatcactattataagcaaaaattgacttgttaggttcattcaataactgatgtatgtggtctata-tataaactacatacatcatttatt-gaatgaatc 5535751  T
Q  260 taagaaatagatttttgcttataatagtga 289  Q
    ||| ||||   |||||||||||| ||||||    
T  5535750 taaaaaatgagtttttgcttatactagtga 5535721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 289
Target Start/End: Complemental strand, 19934773 - 19934645
Alignment:
Q  160 gatcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatc 259  Q
    |||||| |||||||  ||||||| | |||||| ||| ||| ||||| |||| ||||||||| ||   ||| |||| ||| || ||||||| || ||||||    
T  19934773 gatcactattataagcaaaaatctattttttagattcattcaataaatgatgtatgtggtccattaaatagaccacatacatcatttattgaa-tgaatc 19934675  T
Q  260 taagaaatagatttttgcttataatagtga 289  Q
    ||| || | || ||||||||||||||||||    
T  19934674 taaaaagtggaattttgcttataatagtga 19934645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 289
Target Start/End: Complemental strand, 31933758 - 31933654
Alignment:
Q  184 actttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagatttttgcttataa 283  Q
    |||||||| ||| ||| |||||  ||| ||||||||||| | | ||||||| | | || ||||||| |||||||||||| || ||||  |||||||||||    
T  31933758 actttttagattcatttaataaacgatgtatgtggtctacaatgtaaaccacagacatcatttatt-aaatgaatctaaaaagtagaaatttgcttataa 31933660  T
Q  284 tagtga 289  Q
    ||||||    
T  31933659 tagtga 31933654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 48402463 - 48402543
Alignment:
Q  207 tgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagatttttgcttataatagtg 288  Q
    |||| ||||| |||| |||||||||||  ||| || ||||| | || ||||||||| | |||||||||||||||||||||||    
T  48402463 tgatgtatgtagtctgtattataaaccgcatacatcatttaatgaa-tgaatctaaaatatagatttttgcttataatagtg 48402543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 289
Target Start/End: Complemental strand, 14173522 - 14173397
Alignment:
Q  162 tcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatcta 261  Q
    |||||||||||| ||||| || |||| ||| ||| ||| ||||| |||| ||||||||| |||||||| || | |||  | ||||||| || ||||||||    
T  14173522 tcacaattataagaaaaa-tctacttcttagattcattcaataaatgatgtatgtggtcaatattatagactacatacttcatttattgaa-tgaatcta 14173425  T
Q  262 agaaatagatttttgcttataatagtga 289  Q
    | || |||||||||||||||||||||||    
T  14173424 aaaattagatttttgcttataatagtga 14173397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 289
Target Start/End: Complemental strand, 14178058 - 14177933
Alignment:
Q  162 tcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatcta 261  Q
    |||||||||||| ||||| || |||| ||| ||| ||| ||||| |||| ||||||||| |||||||| || | |||  | ||||||| || ||||||||    
T  14178058 tcacaattataagaaaaa-tctacttcttagattcattcaataaatgatgtatgtggtcaatattatagactacatacttcatttattgaa-tgaatcta 14177961  T
Q  262 agaaatagatttttgcttataatagtga 289  Q
    | || |||||||||||||||||||||||    
T  14177960 aaaattagatttttgcttataatagtga 14177933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 289
Target Start/End: Original strand, 16120995 - 16121098
Alignment:
Q  185 ctttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagatttttgcttataat 284  Q
    ||||||||||| ||| ||||| |||| ||  |||||||||||||  |||| ||| || ||||||| || ||||||||| || | ||||||||||||||||    
T  16120995 ctttttaaattcattcaataaatgatgtacttggtctatattattgaccaaatacatcatttatttaa-tgaatctaaaaagttgatttttgcttataat 16121093  T
Q  285 agtga 289  Q
    |||||    
T  16121094 agtga 16121098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 289
Target Start/End: Complemental strand, 6033060 - 6032973
Alignment:
Q  201 aataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagatttttgcttataatagtga 289  Q
    ||||| |||| ||||| |||||||||| | |||| ||| |||||||||| |||||||||||| | ||  |||||| |||||||||||||    
T  6033060 aataaatgatgtatgtagtctatattaaagaccacatacattatttatt-aaatgaatctaaaatatcaatttttacttataatagtga 6032973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 289
Target Start/End: Complemental strand, 14218314 - 14218204
Alignment:
Q  178 aaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagatttttgc 277  Q
    ||||| || ||||||||| ||| ||| | |||| ||| |||||| ||||||| || ||||  |||||||| | |||||||||||| | || |||||||||    
T  14218314 aaatctacattttaaatttatttaattaatgatgtatatggtctttattatatactatattcattatttaat-aaatgaatctaaaatattgatttttgc 14218216  T
Q  278 ttataatagtga 289  Q
    ||||||| ||||    
T  14218215 ttataattgtga 14218204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 29168529 - 29168591
Alignment:
Q  199 tgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaa 262  Q
    ||||||| |||| |||||||||||||||||| |||| ||| || |||||||| |||||||||||    
T  29168529 tgaataaatgatgtatgtggtctatattatataccacatacataatttattc-aatgaatctaa 29168591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 289
Target Start/End: Original strand, 17773522 - 17773634
Alignment:
Q  176 aaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagattttt 275  Q
    ||||||| |||||||| ||  ||| ||||| |||| |||||||||| ||||||| | || ||| || ||| ||| || || |||||| || |||||||||    
T  17773522 aaaaatccactttttagatacattcaataaatgatgtatgtggtctttattatatatcacatacatcattaattgaa-tgtatctaaaaagtagattttt 17773620  T
Q  276 gcttataatagtga 289  Q
    ||||||| ||||||    
T  17773621 gcttatattagtga 17773634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 267
Target Start/End: Original strand, 13964426 - 13964530
Alignment:
Q  162 tcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatcta 261  Q
    |||| |||||||  ||||||| || ||||||||| ||| ||||| |||| |||||||||||||||||| ||||| || || ||||| || ||||||||||    
T  13964426 tcactattataagcaaaaatcaacattttaaattcattcaataaatgatgtatgtggtctatattatagaccatgtacatcatttactc-aatgaatcta 13964524  T
Q  262 agaaat 267  Q
    | ||||    
T  13964525 aaaaat 13964530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 289
Target Start/End: Complemental strand, 28882797 - 28882671
Alignment:
Q  162 tcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatcta 261  Q
    |||| |||||||  ||||||| || |||||  || ||| ||||| |||||||||||||||||  |||| |||| ||| || |||||||  ||||||||||    
T  28882797 tcactattataagcaaaaatcaaccttttaggtttattcaataaatgatatatgtggtctattatatataccacatacatcatttatt-gaatgaatcta 28882699  T
Q  262 agaaatagatttttgcttataatagtga 289  Q
    | || |||| ||||||| ||||||||||    
T  28882698 aaaagtagacttttgctcataatagtga 28882671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 24052899 - 24052961
Alignment:
Q  226 tataaaccatatatattatttattcaaatgaatctaagaaatagatttttgcttataatagtga 289  Q
    ||||||||||||| || |||||||||| |||| |||| || |||||||||| ||||||||||||    
T  24052899 tataaaccatatacatcatttattcaa-tgaacctaaaaagtagatttttgtttataatagtga 24052961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 35781273 - 35781324
Alignment:
Q  201 aataagtgatatatgtggtctatattataaaccatatatattatttattcaa 252  Q
    ||||| ||||||||| ||||||| |||||||||| || ||||||||||||||    
T  35781273 aataaatgatatatgaggtctatgttataaaccacatttattatttattcaa 35781324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 289
Target Start/End: Complemental strand, 24820407 - 24820305
Alignment:
Q  185 ctttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagatttttgcttataat 284  Q
    ||||||| ||| ||| ||||| |||| |||||| ||| ||| |||||||| ||| || ||||||| || |||| ||||||| |  |||||||||||||||    
T  24820407 ctttttagattcattcaataaatgatgtatgtgatctttat-ataaaccacatacatcatttattgaa-tgaacctaagaagtgaatttttgcttataat 24820310  T
Q  285 agtga 289  Q
    |||||    
T  24820309 agtga 24820305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 289
Target Start/End: Original strand, 19175617 - 19175721
Alignment:
Q  184 actttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagatttttgcttataa 283  Q
    ||||||||  || ||| ||||| |||| |||||||||||| | || ||||| ||| || ||||||| || ||||||||| || |||||||||||||||||    
T  19175617 actttttaggttcattcaataaatgatgtatgtggtctatttaatgaaccacatacatcatttattgaa-tgaatctaaaaagtagatttttgcttataa 19175715  T
Q  284 tagtga 289  Q
    ||||||    
T  19175716 tagtga 19175721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 289
Target Start/End: Original strand, 34953903 - 34954029
Alignment:
Q  162 tcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatcta 261  Q
    |||| |||||||  ||||||| |  ||||||||| ||| | ||| |||| ||||||||||||| || | |||||||| || ||| ||| || ||||||||    
T  34953903 tcactattataagcaaaaatcaatattttaaattcattcattaaatgatgtatgtggtctataataaagaccatatacatcattaattgaa-tgaatcta 34954001  T
Q  262 agaaatagatttttgcttataatagtga 289  Q
    | | ||| ||||||||||||||||||||    
T  34954002 aaatataaatttttgcttataatagtga 34954029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 9676059 - 9676099
Alignment:
Q  249 tcaaatgaatctaagaaatagatttttgcttataatagtga 289  Q
    ||||||||||||||||||| ||||||| |||||||||||||    
T  9676059 tcaaatgaatctaagaaattgatttttacttataatagtga 9676099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 285
Target Start/End: Original strand, 44673932 - 44674014
Alignment:
Q  201 aataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagatttttgcttataata 285  Q
    ||||| ||||||||||||||||||| |||||| | |||||| | |||||  ||||||||||| || || ||||||||||||||||    
T  44673932 aataaatgatatatgtggtctatataataaactacatatatca-ttatt-gaatgaatctaaaaattaaatttttgcttataata 44674014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 289
Target Start/End: Complemental strand, 46907007 - 46906868
Alignment:
Q  149 atacaccatatgatcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttat 248  Q
    ||||||||| || ||||  ||||||  ||||||| || ||||| ||  ||| | ||| |||| ||||| |||| |||||||||||  ||| || |||||     
T  46907007 atacaccatctggtcactgttataagcaaaaatcaacgttttagatacattcattaaatgatgtatgtagtctgtattataaaccgcatacatcatttaa 46906908  T
Q  249 tcaaatgaatctaagaaatagatttttgcttataatagtga 289  Q
    | || ||||||||| | ||||||||||||||||||||||||    
T  46906907 tgaa-tgaatctaaaatatagatttttgcttataatagtga 46906868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 262
Target Start/End: Complemental strand, 6735817 - 6735732
Alignment:
Q  176 aaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaa 262  Q
    ||||||| |||||||| ||| ||||||||| |||||||||     ||||||||| |||| ||| ||||||||||| |||||||||||    
T  6735817 aaaaatcaactttttagatttattgaataaatgatatatgcatcttatattatagaccacatacattatttattc-aatgaatctaa 6735732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Original strand, 2122665 - 2122702
Alignment:
Q  252 aatgaatctaagaaatagatttttgcttataatagtga 289  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  2122665 aatgaatctaaaaaatggatttttgcttataatagtga 2122702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 225
Target Start/End: Original strand, 10256786 - 10256851
Alignment:
Q  160 gatcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatat 225  Q
    |||||| ||||||| |||||||  |||||||| ||| ||| ||||| |||| ||||||||||||||    
T  10256786 gatcactattataagaaaaaattcactttttagattcattcaataaatgatgtatgtggtctatat 10256851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 285
Target Start/End: Original strand, 23394695 - 23394819
Alignment:
Q  160 gatcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatc 259  Q
    |||||| ||||||| |||||||| |   |||| ||| ||| ||||| |||| ||||||||||| |||||||| || ||| || || |||| |||||||||    
T  23394695 gatcactattataataaaaaatctatactttagattcatttaataaatgatgtatgtggtctacattataaatcacatacatcatctatt-aaatgaatc 23394793  T
Q  260 taagaaatagatttttgcttataata 285  Q
    ||| | ||   |||||||||||||||    
T  23394794 taaaatatttttttttgcttataata 23394819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Complemental strand, 38834655 - 38834618
Alignment:
Q  252 aatgaatctaagaaatagatttttgcttataatagtga 289  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  38834655 aatgaatctaaaaaataaatttttgcttataatagtga 38834618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 50144193 - 50144245
Alignment:
Q  209 atatatgtggtctatattataaaccatatatattatttattcaaatgaatctaa 262  Q
    |||||| ||||||||||||||||||| |||||||||| ||| ||||||| ||||    
T  50144193 atatatatggtctatattataaaccacatatattattaatt-aaatgaacctaa 50144245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 289
Target Start/End: Complemental strand, 1409159 - 1409056
Alignment:
Q  185 ctttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagatttttgcttataat 284  Q
    ||||||| ||| ||| ||||| |||| |||| ||||||| | ||| || | ||| |||||||||| |||||||||||| || |  | |||||||||||||    
T  1409159 ctttttagattcattcaataaatgatgtatgcggtctatgt-atagactagatacattatttatttaaatgaatctaaaaagtgaacttttgcttataat 1409061  T
Q  285 agtga 289  Q
    |||||    
T  1409060 agtga 1409056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 287
Target Start/End: Complemental strand, 3549887 - 3549788
Alignment:
Q  187 ttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagatttttgcttataatag 286  Q
    ||||||||| ||| | ||| | || ||||||||||||| || | ||| ||||||| ||| ||| || ||||||||| |  ||||||||||||||||||||    
T  3549887 ttttaaattcattcattaaataatgtatgtggtctataataaagaccgtatatatcattaattgaa-tgaatctaaaatgtagatttttgcttataatag 3549789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 21444289 - 21444218
Alignment:
Q  210 tatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagatttttgcttata 282  Q
    ||||||| ||||||| || | |||| |||||||||||||| |||||||||||| | ||  |||||||||||||    
T  21444289 tatatgttgtctataataaagaccacatatattatttatt-aaatgaatctaaaatatgtatttttgcttata 21444218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 22558898 - 22558969
Alignment:
Q  190 taaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaa 262  Q
    |||||| ||| ||| | ||||||||||||||| |||||||||| | |||| | ||||||| ||||||||||||    
T  22558898 taaatttatttaattaatgatatatgtggtctttattataaactacatatttcatttatt-aaatgaatctaa 22558969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 289
Target Start/End: Original strand, 39393019 - 39393105
Alignment:
Q  201 aataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagatttttgcttataatagtga 289  Q
    ||||| |||| |||||||| ||||| ||  |||||||||||||||||||  ||||||||||| |||||  |  ||||||||||||||||    
T  39393019 aataaatgatgtatgtggtatatat-atggaccatatatattatttatt-gaatgaatctaaaaaataattagttgcttataatagtga 39393105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 43318065 - 43318136
Alignment:
Q  212 tatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagatttttgcttataat 284  Q
    ||||| ||||||| |||| ||||| ||||| ||||||| |||||||||||| ||||  ||| |||||||||||    
T  43318065 tatgtagtctataatatagaccatgtatatcatttatt-aaatgaatctaaaaaatgaattcttgcttataat 43318136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 285
Target Start/End: Complemental strand, 43603701 - 43603638
Alignment:
Q  221 tatattataaaccatatatattatttattcaaatgaatctaagaaatagatttttgcttataata 285  Q
    ||||||||| |||| |||||| ||||||| || ||||||||| ||||  ||||||||||||||||    
T  43603701 tatattatataccacatatataatttatttaa-tgaatctaacaaatgaatttttgcttataata 43603638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 289
Target Start/End: Complemental strand, 2456433 - 2456343
Alignment:
Q  198 ttgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagatttttgcttataatagtga 289  Q
    |||||||| |||||||||||||||||||||    ||| ||| || ||| |||| |||||| |||| || |||||||||||||||||||||||    
T  2456433 ttgaataaatgatatatgtggtctatattaatgtccacatacatcattaattc-aatgaacctaaaaagtagatttttgcttataatagtga 2456343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 6250646 - 6250732
Alignment:
Q  201 aataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatct-aagaaatagatttttgcttataatagt 287  Q
    ||||| ||||||||||||||||||||||| ||   ||| || ||||||| |||||||||| || |||||||||||| |||||||||||    
T  6250646 aataaatgatatatgtggtctatattatatactgcatacatcatttatt-aaatgaatctaaacaaatagattttttcttataatagt 6250732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 27163193 - 27163259
Alignment:
Q  183 gactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttatt 249  Q
    |||||||||  || ||||||||| |||| ||||||||||||||||||||||| ||| || |||||||    
T  27163193 gactttttaggttcattgaataaatgatgtatgtggtctatattataaaccacatacatcatttatt 27163259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 287
Target Start/End: Original strand, 12274816 - 12274940
Alignment:
Q  162 tcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatcta 261  Q
    |||| |||||||  ||||||| || |||||  || ||| ||||| |||| ||||||| ||||| |||| |||| ||| ||||| |||| || ||||||||    
T  12274816 tcactattataagcaaaaatccacattttatgttcattcaataaatgatgtatgtggcctataatatagaccacatacattatatattgaa-tgaatcta 12274914  T
Q  262 agaaatagatttttgcttataatagt 287  Q
    | || || ||||||||||||||||||    
T  12274915 aaaagtacatttttgcttataatagt 12274940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 289
Target Start/End: Complemental strand, 43813244 - 43813132
Alignment:
Q  176 aaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagattttt 275  Q
    ||||||| |||| ||| ||| ||| ||||| |||| ||||||||| |||||||| || | |||  | ||||||| || ||||||||| || || ||||||    
T  43813244 aaaaatcaacttcttagattcattcaataaatgatgtatgtggtcaatattatagactacatacttcatttattgaa-tgaatctaaaaattaaattttt 43813146  T
Q  276 gcttataatagtga 289  Q
    ||||||||||||||    
T  43813145 gcttataatagtga 43813132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 30486696 - 30486613
Alignment:
Q  183 gactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaat 267  Q
    ||||||||| ||| ||||||||| |||| |||||||| |||  |||| |||| ||| ||||||||||| ||||||||||| ||||    
T  30486696 gactttttagatttattgaataaatgatgtatgtggtgtatgatatataccacatacattatttattc-aatgaatctaaaaaat 30486613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 6182962 - 6183048
Alignment:
Q  201 aataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaag-aaatagatttttgcttataatagt 287  Q
    ||||| |||| || || ||||||||||||||||  ||| || ||||||| ||||||||||||  |||||||||||| |||||||||||    
T  6182962 aataaatgatgtacgttgtctatattataaaccgcatacatcatttatt-aaatgaatctaaacaaatagattttttcttataatagt 6183048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 34565047 - 34564988
Alignment:
Q  175 aaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaacca 234  Q
    |||||| | ||||||||  || |||||||||||||| |||||||||||||||||| ||||    
T  34565047 aaaaaaaccactttttaggttaattgaataagtgatgtatgtggtctatattatagacca 34564988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 289
Target Start/End: Original strand, 37491280 - 37491406
Alignment:
Q  162 tcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatcta 261  Q
    |||| |||||||  ||||||  |||||||| ||| ||| ||||| |||| ||||| |||||||| |   |||||||| || ||||||| |||||||||||    
T  37491280 tcactattataagcaaaaatttactttttagatttattaaataaatgatgtatgtagtctatataagtgaccatatacatcatttatt-aaatgaatcta 37491378  T
Q  262 agaaatagatttttgcttataatagtga 289  Q
    | || || | ||||| ||||||||||||    
T  37491379 aaaagtaaacttttgattataatagtga 37491406  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 27165233 - 27165172
Alignment:
Q  227 ataaaccatatatattatttattcaaatgaatctaagaaatagatttttgcttataatagtga 289  Q
    |||||||||||| || ||||||| |||||||||||| ||||||| ||||  ||||||||||||    
T  27165233 ataaaccatatacataatttatt-aaatgaatctaaaaaatagacttttatttataatagtga 27165172  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 289
Target Start/End: Original strand, 31319568 - 31319649
Alignment:
Q  207 tgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagatttttgcttataatagtga 289  Q
    ||||||||||||||| ||||||| || | ||| || |||| || || ||||||||| ||||| |||||| |||||||||||||    
T  31319568 tgatatatgtggtctttattatagactacatacatcattttttgaa-tgaatctaaaaaatatatttttccttataatagtga 31319649  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 34750462 - 34750337
Alignment:
Q  162 tcacaattataa-caaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatct 260  Q
    |||| ||||||| ||||||| | ||||||||| || |||||||||||||| || ||||||  |  | || |||||||| || ||||||||   |||| ||    
T  34750462 tcactattataagcaaaaaaactactttttaagttcattgaataagtgatgtacgtggtcattgatttagaccatatacatcatttattc-ggtgaacct 34750364  T
Q  261 aagaaatagatttttgcttataatagt 287  Q
    || || |||||||||||||||||||||    
T  34750363 aaaaagtagatttttgcttataatagt 34750337  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 40332376 - 40332310
Alignment:
Q  186 tttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaa 252  Q
    |||||||||| ||| ||||| | |||||| |||||||||||||||| |||||| || | ||||||||    
T  40332376 tttttaaatttattaaataattaatatatttggtctatattataaatcatatacatgaattattcaa 40332310  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 289
Target Start/End: Original strand, 18654603 - 18654679
Alignment:
Q  212 tatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagatttttgcttataatagtga 289  Q
    |||||||||||||| ||| |||||||| || ||||||| |||| ||||||| ||||| | || | |||||||||||||    
T  18654603 tatgtggtctatataatataccatatacatcatttatt-aaataaatctaaaaaataaacttgtacttataatagtga 18654679  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 287
Target Start/End: Complemental strand, 54690912 - 54690833
Alignment:
Q  207 tgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaagaaatagatttttgcttataatagt 287  Q
    |||||||| |||||| |||||||||||||||| || ||||| |  ||||||||||| |||||  ||||| |||||||||||    
T  54690912 tgatatatatggtctttattataaaccatatacatcatttaat-gaatgaatctaaaaaataatttttttcttataatagt 54690833  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 245
Target Start/End: Complemental strand, 30686296 - 30686258
Alignment:
Q  207 tgatatatgtggtctatattataaaccatatatattatt 245  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  30686296 tgatgtatgtggtctatattatgaaccatatatattatt 30686258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 42681187 - 42681273
Alignment:
Q  162 tcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttat 248  Q
    |||| |||||||  ||||||  || ||||||||| ||| ||||| |||||||||||||| | |||||||| |||||| || ||||||    
T  42681187 tcactattataagtaaaaatttacattttaaattcatttaataaatgatatatgtggtcaacattataaatcatatacatcatttat 42681273  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 54726109 - 54726161
Alignment:
Q  209 atatatgtggtctatattataaaccatatatattatttattcaaatgaatctaa 262  Q
    ||||||||||||||||||||||| || |||||| ||| ||| ||||||||||||    
T  54726109 atatatgtggtctatattataaatcacatatatcattaatt-aaatgaatctaa 54726161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 289
Target Start/End: Complemental strand, 21217312 - 21217173
Alignment:
Q  149 atacaccatatgatcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttat 248  Q
    ||||| ||| || |||| |||||||  ||||||| || ||||| ||  ||| | ||| |||| ||||| |||| |||||||||||  ||| || |||||     
T  21217312 atacatcatctggtcactattataagcaaaaatcaacgttttagatatattcattaaatgatgtatgtagtctgtattataaaccgcatacatcatttaa 21217213  T
Q  249 tcaaatgaatctaagaaatagatttttgcttataatagtga 289  Q
    | || ||||||||| |  |||||||||||||||||||||||    
T  21217212 tgaa-tgaatctaaaatgtagatttttgcttataatagtga 21217173  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 289
Target Start/End: Original strand, 42787610 - 42787748
Alignment:
Q  149 atacaccatatgatcacaattataacaaaaaatcgactttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttat 248  Q
    ||||||||| || |||| |||||||  ||||||| | ||| || ||  ||| ||||| |||||||||| |||||||| |||||||| | | || ||||||    
T  42787610 atacaccatctggtcactattataagcaaaaatcaattttgtagatccattcaataaatgatatatgtagtctatataataaaccaca-acatcatttat 42787708  T
Q  249 tcaaatgaatctaagaaatagatttttgcttataatagtga 289  Q
    | || |||| |||| ||||  ||||||| ||||||||||||    
T  42787709 tgaa-tgaacctaaaaaatgaatttttgtttataatagtga 42787748  T

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Target: scaffold1266 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 241 - 164
Alignment:
Q  184 actttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaa 262  Q
    |||||||| ||| ||| ||||| |||| ||||||||||||| ||| ||||| ||| || ||||||| ||||||||||||    
T  241 actttttagattcattcaataaatgatgtatgtggtctataatatgaaccacatacataatttatt-aaatgaatctaa 164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 5417 - 5494
Alignment:
Q  184 actttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaa 262  Q
    ||||||||| || ||| ||| | |||| ||||||||||||||||||||||| ||| || ||| ||| ||||||||||||    
T  5417 actttttaagttcattcaattaatgatgtatgtggtctatattataaaccacatacatcattaatt-aaatgaatctaa 5494  T

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Target: scaffold0263 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 19822 - 19899
Alignment:
Q  184 actttttaaattgattgaataagtgatatatgtggtctatattataaaccatatatattatttattcaaatgaatctaa 262  Q
    |||||||| ||| ||| ||||| |||| ||||||||||||| ||| ||||| ||| || ||||||| ||||||||||||    
T  19822 actttttagattcattaaataaatgatgtatgtggtctataatatgaaccacatacataatttatt-aaatgaatctaa 19899  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Complemental strand, 139340 - 139303
Alignment:
Q  252 aatgaatctaagaaatagatttttgcttataatagtga 289  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  139340 aatgaatgtaaaaaatagatttttgcttataatagtga 139303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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