View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19401_low_14 (Length: 386)

Name: NF19401_low_14
Description: NF19401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19401_low_14
NF19401_low_14
[»] chr6 (6 HSPs)
chr6 (23-132)||(16977185-16977294)
chr6 (217-341)||(16580793-16580917)
chr6 (217-341)||(16614463-16614587)
chr6 (224-341)||(16572772-16572889)
chr6 (217-341)||(16874654-16874778)
chr6 (44-89)||(16991733-16991778)
[»] chr1 (1 HSPs)
chr1 (218-341)||(7392085-7392208)
[»] chr2 (2 HSPs)
chr2 (218-330)||(233287-233399)
chr2 (218-341)||(21629540-21629662)
[»] scaffold0256 (1 HSPs)
scaffold0256 (242-337)||(10838-10933)
[»] chr7 (1 HSPs)
chr7 (218-330)||(48298403-48298515)


Alignment Details
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 16977185 - 16977294
Alignment:
Q  23 gcagaaagtggaaaagtaaacaatatctgtcctgtttttatcgcatctacttccttctcgcctatactaattaggagaacctccgtctgttggctgcaat 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  16977185 gcagaaagtggaaaagtaaacaatatctgtcctgtttttatcgcatctacttccttctcgcctatactaattaggagaacctccgtctgttagttgcaat 16977284  T
Q  123 ccttctcaaa 132  Q
    ||||||||||    
T  16977285 ccttctcaaa 16977294  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 217 - 341
Target Start/End: Complemental strand, 16580917 - 16580793
Alignment:
Q  217 atgcttttgtagctcttccattagtctctgcaaggatagataatttctcggtcaactcgaacaccaaagcctgcacccttgactgtttaacattttcgaa 316  Q
    |||||| |||||||||| || || |||  |||||||| |||||||||||||||||||||||| |||||||||||||| | ||  ||| |||||||  |||    
T  16580917 atgcttctgtagctctttcactactcttagcaaggatggataatttctcggtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaa 16580818  T
Q  317 cacaatgcacccagatagttgatcc 341  Q
    |||||||||||||||| | ||||||    
T  16580817 cacaatgcacccagatggctgatcc 16580793  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 217 - 341
Target Start/End: Original strand, 16614463 - 16614587
Alignment:
Q  217 atgcttttgtagctcttccattagtctctgcaaggatagataatttctcggtcaactcgaacaccaaagcctgcacccttgactgtttaacattttcgaa 316  Q
    |||||| |||||||||| || || |||  |||||||| |||||||||||||||||||||||| |||||||||||||| | ||  ||| |||||||  |||    
T  16614463 atgcttctgtagctctttcactactcttagcaaggatggataatttctcggtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaa 16614562  T
Q  317 cacaatgcacccagatagttgatcc 341  Q
    |||||||||||||||| | ||||||    
T  16614563 cacaatgcacccagatggctgatcc 16614587  T

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Target: chr6; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 224 - 341
Target Start/End: Complemental strand, 16572889 - 16572772
Alignment:
Q  224 tgtagctcttccattagtctctgcaaggatagataatttctcggtcaactcgaacaccaaagcctgcacccttgactgtttaacattttcgaacacaatg 323  Q
    |||||||||| ||||| |||  |||||||| ||||||||||| |||||||||||| |||||||||||||| | ||  ||| |||||||  ||||||||||    
T  16572889 tgtagctctttcattactcttagcaaggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatg 16572790  T
Q  324 cacccagatagttgatcc 341  Q
    ||||||||| | ||||||    
T  16572789 cacccagatggctgatcc 16572772  T

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Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 217 - 341
Target Start/End: Complemental strand, 16874778 - 16874654
Alignment:
Q  217 atgcttttgtagctcttccattagtctctgcaaggatagataatttctcggtcaactcgaacaccaaagcctgcacccttgactgtttaacattttcgaa 316  Q
    |||||| |||||||||| ||||| |||  |||||||| ||||||||||| ||||| |||||| |||||||||||||| | ||  ||| |||||||  |||    
T  16874778 atgcttctgtagctctttcattactcttagcaaggatggataatttctcagtcaattcgaacgccaaagcctgcaccatagagagttcaacatttcggaa 16874679  T
Q  317 cacaatgcacccagatagttgatcc 341  Q
    |||||||||||||||| | ||||||    
T  16874678 cacaatgcacccagatggctgatcc 16874654  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 16991733 - 16991778
Alignment:
Q  44 aatatctgtcctgtttttatcgcatctacttccttctcgcctatac 89  Q
    |||||||||| ||||||||||||||  ||||||||||| |||||||    
T  16991733 aatatctgtcttgtttttatcgcataaacttccttctcacctatac 16991778  T

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Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 218 - 341
Target Start/End: Complemental strand, 7392208 - 7392085
Alignment:
Q  218 tgcttttgtagctcttccattagtctctgcaaggatagataatttctcggtcaactcgaacaccaaagcctgcacccttgactgtttaacattttcgaac 317  Q
    ||||| |||||||||| ||||| ||||||||||||||||||||||||| ||||||| |||  ||||||||||||||||||| |||| |||||||  |||     
T  7392208 tgcttctgtagctctttcattactctctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagtgttcaacatttcggaaa 7392109  T
Q  318 acaatgcacccagatagttgatcc 341  Q
    | ||||||||||| | ||||||||    
T  7392108 ataatgcacccagttggttgatcc 7392085  T

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Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 218 - 330
Target Start/End: Original strand, 233287 - 233399
Alignment:
Q  218 tgcttttgtagctcttccattagtctctgcaaggatagataatttctcggtcaactcgaacaccaaagcctgcacccttgactgtttaacattttcgaac 317  Q
    ||||| |||||||||| ||||| ||||||||||||||||||||||||| ||||||| |||  ||||||||||||||||||| |||| |||||||  |||     
T  233287 tgcttctgtagctctttcattactctctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagtgttcaacatttctgaaa 233386  T
Q  318 acaatgcacccag 330  Q
    | |||||||||||    
T  233387 ataatgcacccag 233399  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 218 - 341
Target Start/End: Complemental strand, 21629662 - 21629540
Alignment:
Q  218 tgcttttgtagctcttccattagtctctgcaaggatagataatttctcggtcaactcgaacaccaaagcctgcacccttgactgtttaacattttcgaac 317  Q
    ||||| |||||||||| ||||| ||| |||||||||||||| ||| |  |||||||||||| |||| |||||||||||||| |||| |||||||  |||     
T  21629662 tgcttatgtagctctttcattactctttgcaaggatagata-tttattagtcaactcgaacgccaaggcctgcacccttgagtgttcaacatttcggaat 21629564  T
Q  318 acaatgcacccagatagttgatcc 341  Q
    ||||||||||||||| ||||||||    
T  21629563 acaatgcacccagatggttgatcc 21629540  T

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Target: scaffold0256 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 242 - 337
Target Start/End: Original strand, 10838 - 10933
Alignment:
Q  242 ctctgcaaggatagataatttctcggtcaactcgaacaccaaagcctgcacccttgactgtttaacattttcgaacacaatgcacccagatagttg 337  Q
    |||||||||||||||||||||||| ||||||| ||||  |||||||||||||||||| |||| |||||||| |||||||||||| |||||| ||||    
T  10838 ctctgcaaggatagataatttctcagtcaacttgaacgacaaagcctgcacccttgagtgttcaacattttggaacacaatgcatccagatggttg 10933  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 218 - 330
Target Start/End: Original strand, 48298403 - 48298515
Alignment:
Q  218 tgcttttgtagctcttccattagtctctgcaaggatagataatttctcggtcaactcgaacaccaaagcctgcacccttgactgtttaacattttcgaac 317  Q
    ||||| || ||||||| ||||| ||||||||||||||||||||||||| ||||||| |||  |||||||||||||||||||  ||| |||||||  |||     
T  48298403 tgcttctgaagctctttcattactctctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagagttcaacatttctgaaa 48298502  T
Q  318 acaatgcacccag 330  Q
    | |||||||||||    
T  48298503 ataatgcacccag 48298515  T

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