View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19401_low_16 (Length: 361)
Name: NF19401_low_16
Description: NF19401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19401_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 20 - 307
Target Start/End: Complemental strand, 45316953 - 45316666
Alignment:
| Q |
20 |
tgagacacaataaatatgattatatgaacatctcttccaataaaagtttggtcacgttgatcatattgtgggagactagaaggattgcattagaaattcc |
119 |
Q |
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| T |
45316953 |
tgagacacaataaatatgattatatgaacatctcttccaataaaagtttggtcacgttgatcatattgtgggagactagaaggattgcattagaaattcc |
45316854 |
T |
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| Q |
120 |
agccacttgcaagttaccatggatgcatttaacaaccaattcaatatatgtttctttgatcaaagttcttggtttcttgtagaggaggtctccggggagt |
219 |
Q |
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| T |
45316853 |
agccacttgcaagttaccatggatgcatttaacaaccaattcaatatatgtttctttgatcaaagttcttggtttcttgtagaggaggtctccggggagt |
45316754 |
T |
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| Q |
220 |
tcctgcgtagaggattactaaaatgatttaaacataggaagttgaagagaaaagatcagttgaacattccaaatagatgtgtgtggat |
307 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45316753 |
tcctgcctagaggattactaaaatgatttaaacataggaagttgaagagaaaatatcagttgaacattccaaatagatgtgtgtggat |
45316666 |
T |
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