View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19401_low_19 (Length: 329)
Name: NF19401_low_19
Description: NF19401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19401_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 5 - 313
Target Start/End: Original strand, 23679714 - 23680018
Alignment:
| Q |
5 |
ttgcactctttatgtaatcttcttttaatgtcagaaccataaattaatactcattaagcaatggtaaacagttctagcttctgcatttctagatatatga |
104 |
Q |
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| T |
23679714 |
ttgcactctttatctaatattcgtgtaatgttggaaccataaat----actcagtaagcaatggtaaacagttctagcttctgcatttctagatatatga |
23679809 |
T |
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| Q |
105 |
taataaattaagaaataactaaagacataatttaccatatcttcaataagtatatatgagatatgtattttcaagatctcttgcaaatcctgaaggatct |
204 |
Q |
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| T |
23679810 |
taataaattaagaaataactaaagacataatttaccatatcttcaataagtatatatgagatatgtattttctagatctcttgcaaatcctgaaggatct |
23679909 |
T |
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| Q |
205 |
aagggaaaagaagagctaagtgtagagtgtaaaacaagtaatatctatcaatgaatgagattactcaatttacataagttataaggcgattgattcctga |
304 |
Q |
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| T |
23679910 |
aagggaaaagaagagctaagtatagagtgtaaaacaagtaatatctatcaatgaatgagattactcaatttacataagttataaggcgattgattcctga |
23680009 |
T |
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| Q |
305 |
cattattca |
313 |
Q |
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||||||||| |
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| T |
23680010 |
cattattca |
23680018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 23701812 - 23701747
Alignment:
| Q |
64 |
aatggtaaacagttctagcttctgcatttctagatatatgataataaattaagaaataactaaaga |
129 |
Q |
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| T |
23701812 |
aatgataaacagttccggcttctgcatttttagatatatgataatagattaagacataactaaaga |
23701747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 23664883 - 23664933
Alignment:
| Q |
64 |
aatggtaaacagttctagcttctgcatttctagatatatgataataaatta |
114 |
Q |
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|||| |||||||||| ||||||||||||| |||||||||||||||| |||| |
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| T |
23664883 |
aatgataaacagttccagcttctgcatttttagatatatgataatagatta |
23664933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 283
Target Start/End: Original strand, 23700270 - 23700302
Alignment:
| Q |
251 |
atcaatgaatgagattactcaatttacataagt |
283 |
Q |
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| T |
23700270 |
atcaatgaatgagattactcaatttacataagt |
23700302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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