View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19401_low_2 (Length: 639)
Name: NF19401_low_2
Description: NF19401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19401_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 13 - 406
Target Start/End: Complemental strand, 7535348 - 7534955
Alignment:
| Q |
13 |
aaaatcgtgctgggttgtataaccgaagggctagtggatcttatcgatataaacatgctagttcaaatagttcgtacaaaggcacactcgtagaagtact |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7535348 |
aaaatcgtgctgggttgtataaccgaagggctagtggatcttatcgatataaacatgctagttcaaatagttagtacaaaggcacactcgtagaagtact |
7535249 |
T |
|
| Q |
113 |
agatagtttttgcagggatggtaaagtgaatgaatcggttgacattttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7535248 |
agatagtttttgcagggatggtaaagtgaatgaagcggttgacattttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaa |
7535149 |
T |
|
| Q |
213 |
ttaatgcacgtttgtgggaagactaagtctcttgaagaggcaagagttgtacacagacatgctttgcaacatttgcatcctcttacggttagcacagaca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7535148 |
ttaatgcacgtttgtgggaagactaagtctcttgaagaggcaagagttgtacacagacatgctttgcaacatttgcatcctcttacggttagcacagaca |
7535049 |
T |
|
| Q |
313 |
atagagtattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttcaagagcatgcctgagtacgatttgactacttggca |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7535048 |
atagagtattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttcaagagcatgcctgagtacgatttgactacttggca |
7534955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 24 - 406
Target Start/End: Complemental strand, 7449796 - 7449417
Alignment:
| Q |
24 |
gggttgtataaccgaagggctagtggatcttatcgatataaacatgctagttcaaatagttcgtacaaaggcacactcgtagaagtactagatagttttt |
123 |
Q |
| |
|
||||||||||||| | ||| |||||||||||||| |||||| |||||||||| ||||| ||| || |||||||| | ||| ||||||||||||| |
|
|
| T |
7449796 |
gggttgtataacctatgggaaagtggatcttatcgggataaacttgctagttcaggtagtttgtataacggcacacttgaggaa---ctagatagttttt |
7449700 |
T |
|
| Q |
124 |
gcagggatggtaaagtgaatgaatcggttgacattttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaattaatgcacgt |
223 |
Q |
| |
|
||||||||||||||||||| ||| | ||||| | ||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||| | | |
|
|
| T |
7449699 |
gcagggatggtaaagtgaaggaagcagttgaaaatttgcaaaagttggaaaagcttcatattcatgtggatttgcagcgttgtttgcaattaatgcgcat |
7449600 |
T |
|
| Q |
224 |
ttgtgggaagactaagtctcttgaagaggcaagagttgtacacagacatgctttgcaacatttgcatcctcttacggttagcacagacaatagagtattg |
323 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7449599 |
ttgtgggaaggctaagtctcttgaggaggcaagagttgtacacagacatgctttgcaacatttgcatcctcttacggttagcacagacaatagagtattg |
7449500 |
T |
|
| Q |
324 |
gagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttcaagagcatgcctgagtacgatttgactacttggca |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7449499 |
gagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttcaagagcatgcctgagtacgatttgactacttggca |
7449417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 405 - 624
Target Start/End: Complemental strand, 7534933 - 7534714
Alignment:
| Q |
405 |
caagaatgggtttccagaagattcaattgatatatttactcaatttaaaaacatgggactaaaacctgatggccaaatgtttattggagtttttggtgca |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7534933 |
caagaatgggtttccagaagattcaattgatatatttactcaatttaaaaacatgggactaaaacctgatggccaaatgtttattggagtttttggtgca |
7534834 |
T |
|
| Q |
505 |
tgtagtatgttgggagatattagtgagggaatgctccactttgaatccatgagcaaagactatggcattgtaccaacaatggcccattatgtcagtctag |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7534833 |
tgtagtatgttgggagatattagtgagggaatgctccactttgaatccatgagcaaagactatggcattgtaccaacaatggcccattatgtcagtctag |
7534734 |
T |
|
| Q |
605 |
tagagatgattgctagtatt |
624 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
7534733 |
tagagatgattgctagtatt |
7534714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 405 - 624
Target Start/End: Complemental strand, 7449395 - 7449176
Alignment:
| Q |
405 |
caagaatgggtttccagaagattcaattgatatatttactcaatttaaaaacatgggactaaaacctgatggccaaatgtttattggagtttttggtgca |
504 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7449395 |
caagaatggttttgcagaagattcaattgatatatttactcaatttaaaaacatgggactaaaacctgatggccaaatgtttattggagtttttggtgca |
7449296 |
T |
|
| Q |
505 |
tgtagtatgttgggagatattagtgagggaatgctccactttgaatccatgagcaaagactatggcattgtaccaacaatggcccattatgtcagtctag |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7449295 |
tgtagtatgttgggagatattagtgagggaatgctgcactttgaatccatgagcaaagactatggcattgtaccaacaatggcccattatgtcagtctag |
7449196 |
T |
|
| Q |
605 |
tagagatgattgctagtatt |
624 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
7449195 |
tagagatgattgctagtatt |
7449176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 5e-70; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 406 - 624
Target Start/End: Complemental strand, 18664383 - 18664165
Alignment:
| Q |
406 |
aagaatgggtttccagaagattcaattgatatatttactcaatttaaaaacatgggactaaaacctgatggccaaatgtttattggagtttttggtgcat |
505 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18664383 |
aagaatgggtttgcagaagattcaattgatttatttactcaatttaaaaggtcaggactaaaacctgatggccaaatgtttattggggtttttggtgcat |
18664284 |
T |
|
| Q |
506 |
gtagtatgttgggagatattagtgagggaatgctccactttgaatccatgagcaaagactatggcattgtaccaacaatggcccattatgtcagtctagt |
605 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||||||| | ||||||| |||||||||||| |||| |||||||| |||||||| |
|
|
| T |
18664283 |
gtagtatgttgggagatattgttgagggaatgctgcactttgaatccatgagtagggactatgacattgtaccaactatggaacattatgtaagtctagt |
18664184 |
T |
|
| Q |
606 |
agagatgattgctagtatt |
624 |
Q |
| |
|
||| ||||||| ||||||| |
|
|
| T |
18664183 |
agacatgattggtagtatt |
18664165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 114 - 401
Target Start/End: Complemental strand, 18664698 - 18664411
Alignment:
| Q |
114 |
gatagtttttgcagggatggtaaagtgaatgaatcggttgacattttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaat |
213 |
Q |
| |
|
||||||| ||||| ||| ||| ||||||| ||| | |||| ||||||||||||| |||||| || |||||| | | |||||| | |||||||||| || |
|
|
| T |
18664698 |
gatagttcttgcatggagggtgaagtgaaggaagcaattgatgttttgcaagtgttagaaaagtttcatattcttgtagatttggatcgttgtttgcgat |
18664599 |
T |
|
| Q |
214 |
taatgcacgtttgtgggaagactaagtctcttgaagaggcaagagttgtacacagacatgctttgcaacatttgcatcctcttacggttagcacagacaa |
313 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| ||| ||| ||||||||| ||||||| || |||||| ||| |
|
|
| T |
18664598 |
taatgcaacaatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacagatatgttttacaacatttgtcacctcttaaagtcagcacatgcaa |
18664499 |
T |
|
| Q |
314 |
tagagtattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttcaagagcatgcctgagtacgatttgactact |
401 |
Q |
| |
|
| || ||||||||||||||||| ||||||||||| ||||||||||| || |||| ||||||| |||| ||||| ||||||||||||| |
|
|
| T |
18664498 |
tggaatattggagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaacatgactgagcgcgatttgactact |
18664411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 157 - 372
Target Start/End: Complemental strand, 18664955 - 18664740
Alignment:
| Q |
157 |
ttttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaattaatgcacgtttgtgggaagactaagtctcttgaagaggcaag |
256 |
Q |
| |
|
||||||||| ||| ||||||||| ||| | || |||||||| | | |||||||| ||||||||| | ||||| ||| || ||| |||||||||||||| |
|
|
| T |
18664955 |
ttttgcaagagttagaaaagcttcatacttatgtggatttgtatctttgtttgcgattaatgcaactgtgtggaaaggctgagtttcttgaagaggcaaa |
18664856 |
T |
|
| Q |
257 |
agttgtacacagacatgctttgcaacatttgcatcctcttacggttagcacagacaatagagtattggagatgtattttgaatgtggttctctagatgat |
356 |
Q |
| |
|
||||||||||| | ||| ||| ||||||||| ||||| || ||| ||||| || |||| |||| |||||||||||| ||||||||||| |||||||| |
|
|
| T |
18664855 |
agttgtacacatatatgttttacaacatttgtcacctctcacagttcgcacatgcattagaatattagagatgtattttcaatgtggttctgtagatgat |
18664756 |
T |
|
| Q |
357 |
gcaatcgacgtgttca |
372 |
Q |
| |
|
||| || ||||||||| |
|
|
| T |
18664755 |
gcagtcaacgtgttca |
18664740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 3e-65; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 406 - 624
Target Start/End: Original strand, 15079445 - 15079663
Alignment:
| Q |
406 |
aagaatgggtttccagaagattcaattgatatatttactcaatttaaaaacatgggactaaaacctgatggccaaatgtttattggagtttttggtgcat |
505 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15079445 |
aagaatgggtttgcagaagattcaattgatttatttactcaatttaaaaggtcaggactaaaacctgatggccaaatgtttattggggtttttggtgcat |
15079544 |
T |
|
| Q |
506 |
gtagtatgttgggagatattagtgagggaatgctccactttgaatccatgagcaaagactatggcattgtaccaacaatggcccattatgtcagtctagt |
605 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||||||| | ||||||| ||||||||||| |||| |||||||| ||| |||| |
|
|
| T |
15079545 |
gtagtatgttgggagatattgttgagggaatgctgcactttgaatccatgagtagggactatgaaattgtaccaactatggaacattatgtaagtatagt |
15079644 |
T |
|
| Q |
606 |
agagatgattgctagtatt |
624 |
Q |
| |
|
||| ||||||| ||||||| |
|
|
| T |
15079645 |
agacatgattggtagtatt |
15079663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 114 - 401
Target Start/End: Original strand, 15079130 - 15079417
Alignment:
| Q |
114 |
gatagtttttgcagggatggtaaagtgaatgaatcggttgacattttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaat |
213 |
Q |
| |
|
||||||| ||||| ||| ||| ||||||| ||| | |||| ||||||||||||| |||||| || |||||||| | |||||| | ||||||||| || |
|
|
| T |
15079130 |
gatagttcttgcatggagggtgaagtgaaggaagcaattgatgttttgcaagtgttagaaaagtttcatattcatgtagatttggatcgttgtttgagat |
15079229 |
T |
|
| Q |
214 |
taatgcacgtttgtgggaagactaagtctcttgaagaggcaagagttgtacacagacatgctttgcaacatttgcatcctcttacggttagcacagacaa |
313 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| ||| ||| ||||||||| ||||||| || |||||| ||| |
|
|
| T |
15079230 |
taatgcaacaatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacagatatgttttacaacatttgtcacctcttaaagtcagcacatgcaa |
15079329 |
T |
|
| Q |
314 |
tagagtattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttcaagagcatgcctgagtacgatttgactact |
401 |
Q |
| |
|
| || ||||||||||||||||| ||||||||||| ||||||||||| || |||| ||||||| |||| ||| ||||||||||||| |
|
|
| T |
15079330 |
tggaatattggagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaacatgaatgaacgcgatttgactact |
15079417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 157 - 372
Target Start/End: Original strand, 15078873 - 15079088
Alignment:
| Q |
157 |
ttttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaattaatgcacgtttgtgggaagactaagtctcttgaagaggcaag |
256 |
Q |
| |
|
||||||||| ||| ||||||||| ||| | || |||||||| | | |||||||| ||||||||| | ||||| ||| || ||| |||||||||||||| |
|
|
| T |
15078873 |
ttttgcaagagttagaaaagcttcatacttatgtggatttgtatctttgtttgcgattaatgcaactgtgtggaaaggctgagtttcttgaagaggcaaa |
15078972 |
T |
|
| Q |
257 |
agttgtacacagacatgctttgcaacatttgcatcctcttacggttagcacagacaatagagtattggagatgtattttgaatgtggttctctagatgat |
356 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||| ||||| || || ||||| || |||| |||| |||||||||||| ||||||||||| |||||||| |
|
|
| T |
15078973 |
agttgtacacagatatgttttacaacatttgtcacctctcacagtccgcacatgcattagaatattagagatgtattttcaatgtggttctgtagatgat |
15079072 |
T |
|
| Q |
357 |
gcaatcgacgtgttca |
372 |
Q |
| |
|
||| || ||||||||| |
|
|
| T |
15079073 |
gcagtcaacgtgttca |
15079088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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