View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19401_low_20 (Length: 328)
Name: NF19401_low_20
Description: NF19401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19401_low_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 141; Significance: 7e-74; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 57 - 214
Target Start/End: Original strand, 23679110 - 23679269
Alignment:
| Q |
57 |
cagaatgtattagatctcacaaaatcttctataaaccaatagag--agatacattgtcaactgaaatatgctgcaattatcataccaaagcaatatgttt |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23679110 |
cagaatgtattagatctcacaaaatcttctataaaccaatagagagagatacattgtcaactgaaatatgctgcaattatcatatcaaagcaatatgttt |
23679209 |
T |
|
| Q |
155 |
agatgacacaagtatcatatgtaaagaaatgctattattttctaagaaatatttgtctta |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23679210 |
agatgacacaagtatcatatgtaaagaaatgctattattttctgagaaatatttgtctta |
23679269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 23672507 - 23672561
Alignment:
| Q |
11 |
caaaggtagaatgccaatcaaacaatttgagtaatgactacaacctcagaatgta |
65 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23672507 |
caaaggtagaatgccaatcaaacaatttgagtaatgactacaacctcagaatgta |
23672561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 23747087 - 23747139
Alignment:
| Q |
49 |
tacaacctcagaatgtattagatctcacaaaatcttctataaaccaatagaga |
101 |
Q |
| |
|
|||||| ||| |||||| | ||||||||| |||||||||| |||||||||||| |
|
|
| T |
23747087 |
tacaacatcataatgtactggatctcacagaatcttctatgaaccaatagaga |
23747139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University