View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19401_low_21 (Length: 309)
Name: NF19401_low_21
Description: NF19401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19401_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 39 - 294
Target Start/End: Complemental strand, 48007840 - 48007586
Alignment:
| Q |
39 |
ggagaaccaagaatgcatgaaagtaatagtttgaccatagacatcatcnnnnnnnaagaatcatattcgagaagctatttaacactaaatatgaacattt |
138 |
Q |
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| T |
48007840 |
ggagaaccaagaatgcatgaaagtaatagtttgaccatatacatcatctttttt-aagaatcatattcgagaagctatttaacactaaatatgaacattt |
48007742 |
T |
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| Q |
139 |
cgtctgacacttttcactaaacctaatctcctttggtcgaccatatagctatcatatccctattttctattcggtaatctagcaaatttcattcaaaacc |
238 |
Q |
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| T |
48007741 |
cgtctgacacttttcactaaacctaatctcctttgttcgaccatatatatatcatatccctattttctattcggtaatctagcaaatttcattcaaaacc |
48007642 |
T |
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| Q |
239 |
ttgcaagaaagaaactgtaccatatccaaatttcccaacagaaaatcagaatttac |
294 |
Q |
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| T |
48007641 |
ttgcaagaaagaaactgtaccatatccaaattttccaacagaaaatcaaaatttac |
48007586 |
T |
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Back To:
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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 219 - 294
Target Start/End: Complemental strand, 1604338 - 1604263
Alignment:
| Q |
219 |
agcaaatttcattcaaaaccttgcaagaaagaaactgtaccatatccaaatttcccaacagaaaatcagaatttac |
294 |
Q |
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| T |
1604338 |
agcaaatttcatacaaaaccttgcaagaaaaaaactgtaccatatccgaatttcccaacagaaaatcaaaatttac |
1604263 |
T |
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