View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19401_low_22 (Length: 297)

Name: NF19401_low_22
Description: NF19401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19401_low_22
NF19401_low_22
[»] chr7 (1 HSPs)
chr7 (14-297)||(40213966-40214249)


Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 40213966 - 40214249
Alignment:
Q  14 agatatatatgctttctaaggtaatagttctagatattaaattagtgttggattggatgttttattttttcacaagcaaaaatgatttatcaatattcat 113  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40213966 agatatatatgctttctaaagtaatagttctagatattaaattagtgttggattggatgttttattttttcacaagcaaaaacgatttatcaatattcat 40214065  T
Q  114 ttatgctaattctcctgcactgaccctttattatattatttgtatgaatattatttatttctgccatgcatgcagggaacaaattaatgttgaaccggac 213  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40214066 ttatgctaattctcctgcactgaacctttattatattatttctatgaatattatttatttctgccatgcatgcagggaacaaattaatgttgaaccggac 40214165  T
Q  214 ccgcattgagtaagactccattgcttgaattcggtggccatggtgtactgtcttagcttcttcttgtaaaaatgaccttatcct 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40214166 ccgcattgagtaagactccattgcttgaattcggtggccatggtgtactgtcttagcttcttcttgtaaaaatgaccttatcct 40214249  T

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