View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19401_low_25 (Length: 287)
Name: NF19401_low_25
Description: NF19401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19401_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 47624713 - 47624974
Alignment:
| Q |
13 |
aatatgattggataggactttaattttgtacctgaaatgcagccatagaatattagaagattgaagatggaaaagttggcagtagatgccccccatccac |
112 |
Q |
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| T |
47624713 |
aatatgattggataggactttaattttgtacctgaaatgcagccatagaatattagaagattgaagatggaaaagttggcagtagatgccccccatccac |
47624812 |
T |
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| Q |
113 |
tgagtcagattattatatttatatgaaattagttagcttctaccccttttttaaagtatag-----nnnnnnnnnnnnnnnngtcctttattgactcata |
207 |
Q |
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| T |
47624813 |
tgagtcagattattatatttatatgaagttagttagcttctaccccttttttaaagtacagtttttttttttttttttttttgtcctttattgactcata |
47624912 |
T |
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| Q |
208 |
actaatttcaactacactataccttgagatctctgaatctaattacaagatcctacttaatt |
269 |
Q |
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| T |
47624913 |
actaatttcaactacactataccttgagatctctgaatctaattacaagatcctacttaatt |
47624974 |
T |
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