View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19401_low_29 (Length: 261)
Name: NF19401_low_29
Description: NF19401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19401_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 36926260 - 36926024
Alignment:
| Q |
19 |
cttccaccaaaattgaagttccgagtctttcttgatcgagtcctcatccttgtagtaaatggagcagtagtctttaacccatgtcttgatggcaaaccaa |
118 |
Q |
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| T |
36926260 |
cttccaccaagattgaagttccgagtctttcttgattgagtcctcatccttgtagtaaatggagcagtagtctttaacccatgtcttgatggcaaaccaa |
36926161 |
T |
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| Q |
119 |
atctccagtccatcaactgcataagggtaatcctcgattaataatcgaagaccgtatggcgaagttgagtccttaacagccattcctctgaaatttgaag |
218 |
Q |
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| T |
36926160 |
atctccagtccatcaactgcataagggtaatcctcgattaataatcgaagaccgtatggcgaagttgagtccttaacagccattcctctgaaatttgaag |
36926061 |
T |
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| Q |
219 |
aggtgaagcaattgatcaacaccaatattcatctcac |
255 |
Q |
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| T |
36926060 |
aggtgaagcaattgatcaacaccaatattcatttcac |
36926024 |
T |
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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 46709331 - 46709523
Alignment:
| Q |
19 |
cttccaccaaaattgaagttccgagtctttcttgatcgagtcctcatccttgtagtaaatggagcagtagtctttaacccatgtcttgatggcaaaccaa |
118 |
Q |
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| T |
46709331 |
cttccaccaagattgtagttctgcatctttctttaccgtgtcatcattcttgtagtaaaaggaacagtagtcctgaacccatgtgttgattgcaaaccaa |
46709430 |
T |
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| Q |
119 |
atctccagtccatcaactgcataagggtaatcctcgattaataatcgaagaccgtatggcgaagttgagtccttaacagccattcctctgaaa |
211 |
Q |
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| T |
46709431 |
atctctagcccgtccaccgcgtaagggtaatcgttgactattagtcgaaggccatgcggagaagctgaatctttaattgccattcctctgaaa |
46709523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 6262441 - 6262522
Alignment:
| Q |
72 |
agtaaatggagcagtagtctttaacccatgtcttgatggcaaaccaaatctccagtccatcaactgcataagggtaatcctc |
153 |
Q |
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|||| |||||| |||||||| ||||||||||| || ||| |||||| || ||||||||||| ||||||||||||||||| |
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| T |
6262441 |
agtatatggagacgtagtcttgtacccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctc |
6262522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 9606114 - 9606044
Alignment:
| Q |
86 |
tagtctttaacccatgtcttgatggcaaaccaaatctccagtccatcaactgcataagggtaatcctcgat |
156 |
Q |
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| T |
9606114 |
tagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgat |
9606044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 49608531 - 49608567
Alignment:
| Q |
84 |
agtagtctttaacccatgtcttgatggcaaaccaaat |
120 |
Q |
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| T |
49608531 |
agtagtcctcaacccatgtcttgatggcaaaccaaat |
49608567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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