View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19401_low_31 (Length: 248)
Name: NF19401_low_31
Description: NF19401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19401_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 43989724 - 43989952
Alignment:
| Q |
1 |
ggtcgacgtcactcactaccagcaagtaattaagaagcagtctattacaaaaagcagcagccagtaatctttgcagacacaagaagtcgataactaacca |
100 |
Q |
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| T |
43989724 |
ggtcgacgtcactcactaccagcaagtaattaagaagcagtctattacaaaaagcagcagccagtaatctttgcagacacaagaagtcgataactaacca |
43989823 |
T |
|
| Q |
101 |
gaagcaactatagtaaaaccatcatcaaggcnnnnnnnnnnnnnnnnnnnnnnnnntaacatcacacacccaatttgctctccagctacaagatcaaata |
200 |
Q |
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| T |
43989824 |
gaagcaactatagtaaaaccatcatcaaggcaaaaacacaaaataaaaaataaaaataacatcacacacccaatttgctctccagctacaagatcaaata |
43989923 |
T |
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| Q |
201 |
ttgtcatattcaaattgagaccaaacctt |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
43989924 |
ttgtcatattcaaattgagaccaaacctt |
43989952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 42416023 - 42415955
Alignment:
| Q |
38 |
cagtctattacaaaaagcagcagccagtaatctttgcagacacaagaagtcgataactaaccagaagca |
106 |
Q |
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| T |
42416023 |
cagtctattacaaaaagcagcagccagtagtctttgcagacatgacaagtcgataattaactagaagca |
42415955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 43918237 - 43918156
Alignment:
| Q |
17 |
taccagcaagtaattaagaagcagtctattacaaaaagcagcagccagtaatctttgcagacacaagaagtcgataactaacca |
100 |
Q |
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| T |
43918237 |
taccagcaagtaattatgaagcagtcttttacaagaagtctgagct--tcatcattgcagacacaagaagtcgataactaacca |
43918156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 44003300 - 44003356
Alignment:
| Q |
16 |
ctaccagcaagtaattaagaagcagtctattacaaaaagcagcagccagtaatcttt |
72 |
Q |
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| T |
44003300 |
ctacccgcaagtaattatgcagcagtctgttataaaaagcatcagccagtagtcttt |
44003356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 8831177 - 8831268
Alignment:
| Q |
15 |
actaccagcaagtaattaagaagcagtctattacaaaaagcagcagccagtaatctttgcagacacaagaagtcgataactaaccagaagca |
106 |
Q |
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| T |
8831177 |
actaccagcgagtaattatgcagcagcctattacaaaaggcagcagccagtagtctttgtagacacaagaagtcaataactaaccaaaagca |
8831268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 45094744 - 45094813
Alignment:
| Q |
15 |
actaccagcaagtaattaagaagcagtctatta--caaaaagcagcagccagtaatctttgcagacacaa |
82 |
Q |
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|||||||||||| ||||| | |||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
45094744 |
actaccagcaaggaattatgcagcagtctattaggcaaaaagcagcagccagtagactttgcagacacaa |
45094813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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