View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19401_low_6 (Length: 444)

Name: NF19401_low_6
Description: NF19401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19401_low_6
NF19401_low_6
[»] chr3 (8 HSPs)
chr3 (11-428)||(35246497-35246913)
chr3 (153-203)||(28779328-28779378)
chr3 (153-198)||(48807685-48807730)
chr3 (84-161)||(2923530-2923607)
chr3 (158-203)||(19679381-19679426)
chr3 (157-198)||(23249535-23249576)
chr3 (157-198)||(24235735-24235776)
chr3 (153-198)||(45590641-45590686)
[»] chr5 (5 HSPs)
chr5 (157-203)||(18704088-18704134)
chr5 (153-203)||(36539718-36539768)
chr5 (157-198)||(34205216-34205257)
chr5 (157-190)||(14470337-14470370)
chr5 (157-193)||(34245706-34245742)
[»] chr7 (7 HSPs)
chr7 (153-194)||(25507330-25507371)
chr7 (153-194)||(25558239-25558280)
chr7 (153-194)||(25558437-25558478)
chr7 (80-156)||(30751576-30751652)
chr7 (157-203)||(23721478-23721524)
chr7 (157-198)||(24909641-24909682)
chr7 (163-203)||(49060512-49060552)
[»] chr6 (4 HSPs)
chr6 (153-198)||(2117380-2117425)
chr6 (157-203)||(4006686-4006732)
chr6 (163-196)||(31420937-31420970)
chr6 (164-196)||(10452419-10452451)
[»] chr4 (8 HSPs)
chr4 (157-196)||(42866047-42866086)
chr4 (164-203)||(46175852-46175891)
chr4 (82-156)||(2996630-2996704)
chr4 (153-203)||(18628591-18628641)
chr4 (153-198)||(7694058-7694103)
chr4 (153-198)||(30581725-30581770)
chr4 (158-203)||(49219111-49219156)
chr4 (153-197)||(19250525-19250568)
[»] chr1 (5 HSPs)
chr1 (163-198)||(29007774-29007809)
chr1 (157-196)||(42556683-42556722)
chr1 (157-198)||(4078201-4078242)
chr1 (153-198)||(15488931-15488976)
chr1 (170-198)||(6262716-6262744)
[»] chr8 (2 HSPs)
chr8 (157-203)||(29973053-29973099)
chr8 (159-203)||(45071174-45071218)
[»] chr2 (4 HSPs)
chr2 (165-203)||(31740019-31740057)
chr2 (157-203)||(35485889-35485935)
chr2 (157-198)||(10143149-10143190)
chr2 (153-198)||(37276723-37276768)


Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 11 - 428
Target Start/End: Original strand, 35246497 - 35246913
Alignment:
Q  11 ttatactgagtctaaatttcattaattcaggcatgtgcttgtaggctaacacattaattgcttactgtataaacttatttattgacataagcacttgata 110  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35246497 ttattctgagtctaaatttcatcaattcaggcatgtgcttgtaggctaacaaattaattgcttactgtataaacttatttattgacataagcacttgata 35246596  T
Q  111 aagtgtttggtagagcttatacaaacaacttatagcatgtccataacttataaaaacaacttatagcttatataaaaatagtttgactatattgtctctt 210  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35246597 aagtgtttggtagagcttatgcaaacaacttataacatgtccataacttataaaaacaacttatagcttatataaaaatagtttgactatattgtctctt 35246696  T
Q  211 agactataacttatggataagtgcataaaacttcgcacactagcttcttactttgcatttcaatggatgtaataacacagtaacacaactcaataattaa 310  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35246697 agactataacttatggataagcgcataaaacttcgcacactagcttcttactttgcatttcaatggatgtaat-acacagtaacacaactcaataattaa 35246795  T
Q  311 gtagcaacttaccatagagcaacaggaagaggctaccattcggaagatattcatacgccagaagtttctcttgctgagagcaatagtatgcaacaggtga 410  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35246796 gtagcaacttaccatagagcaacatgaagaggctaccattcggaagatattcatacgccagaagtttctcttgctgagagcaatagtatgcaacaggtga 35246895  T
Q  411 cattacaagagtatgctt 428  Q
    ||||||||||||||||||    
T  35246896 cattacaagagtatgctt 35246913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 28779378 - 28779328
Alignment:
Q  153 ataacttataaaaacaacttatagcttatataaaaatagtttgactatatt 203  Q
    |||||||| |||||||||||||||||||||| |||||||||||||| ||||    
T  28779378 ataacttacaaaaacaacttatagcttatatgaaaatagtttgactttatt 28779328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 48807730 - 48807685
Alignment:
Q  153 ataacttataaaaacaacttatagcttatataaaaatagtttgact 198  Q
    ||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  48807730 ataacttatgaaaacaacttatagcttctatgaaaatagtttgact 48807685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 2923607 - 2923530
Alignment:
Q  84 cttatttattgacataagcacttgataaagtgtttggtagagcttatacaaacaacttatagcatgtccataacttat 161  Q
    ||||| |||||||||||| |||||| | | ||||||| ||| |||||| ||||||||||   ||||||||||| ||||    
T  2923607 cttatctattgacataagtacttgaaagactgtttggaagaacttatagaaacaacttactacatgtccataagttat 2923530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 19679381 - 19679426
Alignment:
Q  158 ttataaaaacaacttatagcttatataaaaatagtttgactatatt 203  Q
    |||||||||||||||||||||||||  |||| ||||||||| ||||    
T  19679381 ttataaaaacaacttatagcttataagaaaacagtttgactttatt 19679426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 23249576 - 23249535
Alignment:
Q  157 cttataaaaacaacttatagcttatataaaaatagtttgact 198  Q
    ||||| ||||||||||||| |||||||||||| |||||||||    
T  23249576 cttatgaaaacaacttatatcttatataaaaacagtttgact 23249535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 24235735 - 24235776
Alignment:
Q  157 cttataaaaacaacttatagcttatataaaaatagtttgact 198  Q
    ||||| |||||||||||||||||||||  |||||||||||||    
T  24235735 cttatgaaaacaacttatagcttatattcaaatagtttgact 24235776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 45590686 - 45590641
Alignment:
Q  153 ataacttataaaaacaacttatagcttatataaaaatagtttgact 198  Q
    ||||||||| ||||||||||||| ||||||| ||||||| ||||||    
T  45590686 ataacttatgaaaacaacttatatcttatatgaaaatagattgact 45590641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 18704088 - 18704134
Alignment:
Q  157 cttataaaaacaacttatagcttatataaaaatagtttgactatatt 203  Q
    ||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  18704088 cttatgaaaacaacttatagcttatataaaaatagcttgactttatt 18704134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 36539768 - 36539718
Alignment:
Q  153 ataacttataaaaacaacttatagcttatataaaaatagtttgactatatt 203  Q
    ||||||||||||||||||||||||||||||| |||| || |||||| ||||    
T  36539768 ataacttataaaaacaacttatagcttatatgaaaacaggttgactttatt 36539718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 34205257 - 34205216
Alignment:
Q  157 cttataaaaacaacttatagcttatataaaaatagtttgact 198  Q
    ||||| |||||||||||||||||||||||||||| |||||||    
T  34205257 cttatgaaaacaacttatagcttatataaaaataatttgact 34205216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 190
Target Start/End: Complemental strand, 14470370 - 14470337
Alignment:
Q  157 cttataaaaacaacttatagcttatataaaaata 190  Q
    ||||||||||||| ||||||||||||||||||||    
T  14470370 cttataaaaacaaattatagcttatataaaaata 14470337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 34245742 - 34245706
Alignment:
Q  157 cttataaaaacaacttatagcttatataaaaatagtt 193  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  34245742 cttataaaaacaacttatagcttatattaaaacagtt 34245706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 25507371 - 25507330
Alignment:
Q  153 ataacttataaaaacaacttatagcttatataaaaatagttt 194  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  25507371 ataacttatgaaaacaacttatagcttatatgaaaatagttt 25507330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 25558239 - 25558280
Alignment:
Q  153 ataacttataaaaacaacttatagcttatataaaaatagttt 194  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  25558239 ataacttatgaaaacaacttatagcttatatgaaaatagttt 25558280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 25558437 - 25558478
Alignment:
Q  153 ataacttataaaaacaacttatagcttatataaaaatagttt 194  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  25558437 ataacttatgaaaacaacttatagcttatatgaaaatagttt 25558478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 30751652 - 30751576
Alignment:
Q  80 taaacttatttattgacataagcacttgataaagtgtttggtagagcttatacaaacaacttatagcatgtccataa 156  Q
    ||||||||| || |||||||||||||||    | ||||||| |||||||||| |||||  |||||||||||||||||    
T  30751652 taaacttatctactgacataagcacttgtgcgactgtttgggagagcttatagaaacagtttatagcatgtccataa 30751576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 23721524 - 23721478
Alignment:
Q  157 cttataaaaacaacttatagcttatataaaaatagtttgactatatt 203  Q
    |||||||||||||||||||| ||| || |||||||||||||| ||||    
T  23721524 cttataaaaacaacttatagtttaaatgaaaatagtttgactttatt 23721478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 24909682 - 24909641
Alignment:
Q  157 cttataaaaacaacttatagcttatataaaaatagtttgact 198  Q
    ||||| ||||||||||||||||||||| |||||| |||||||    
T  24909682 cttatgaaaacaacttatagcttatatgaaaataatttgact 24909641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 49060552 - 49060512
Alignment:
Q  163 aaaacaacttatagcttatataaaaatagtttgactatatt 203  Q
    |||| ||||||||||||||||||||||| ||||||| ||||    
T  49060552 aaaataacttatagcttatataaaaataatttgactttatt 49060512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 2117425 - 2117380
Alignment:
Q  153 ataacttataaaaacaacttatagcttatataaaaatagtttgact 198  Q
    ||||||||| |||||||||||||| |||||| ||||||||||||||    
T  2117425 ataacttatgaaaacaacttatagattatatgaaaatagtttgact 2117380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 4006732 - 4006686
Alignment:
Q  157 cttataaaaacaacttatagcttatataaaaatagtttgactatatt 203  Q
    ||||| |||||||||||||||||||||||||| | ||||||| ||||    
T  4006732 cttatgaaaacaacttatagcttatataaaaacaatttgactttatt 4006686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 196
Target Start/End: Complemental strand, 31420970 - 31420937
Alignment:
Q  163 aaaacaacttatagcttatataaaaatagtttga 196  Q
    ||||||||||||| ||||||||||||||||||||    
T  31420970 aaaacaacttatatcttatataaaaatagtttga 31420937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 10452419 - 10452451
Alignment:
Q  164 aaacaacttatagcttatataaaaatagtttga 196  Q
    |||||||||||||||||||| ||||||||||||    
T  10452419 aaacaacttatagcttatatgaaaatagtttga 10452451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 42866086 - 42866047
Alignment:
Q  157 cttataaaaacaacttatagcttatataaaaatagtttga 196  Q
    ||||| |||||||||||||||||||||||||| |||||||    
T  42866086 cttatgaaaacaacttatagcttatataaaaacagtttga 42866047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 46175852 - 46175891
Alignment:
Q  164 aaacaacttatagcttatataaaaatagtttgactatatt 203  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  46175852 aaacaacttttagcttatataaaaacagtttgactatatt 46175891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 2996704 - 2996630
Alignment:
Q  82 aacttatttattgacataagcacttgataaagtgtttggtagagcttatacaaacaacttatagcatgtccataa 156  Q
    |||||||||||||||||||||||||   | | ||||||  |||||||||  |||||||||||  |||||||||||    
T  2996704 aacttatttattgacataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtccataa 2996630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 18628591 - 18628641
Alignment:
Q  153 ataacttataaaaacaacttatagcttatataaaaatagtttgactatatt 203  Q
    ||||||||| ||||||  ||||| |||||||||||| ||||||||||||||    
T  18628591 ataacttatgaaaacagtttataacttatataaaaacagtttgactatatt 18628641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 7694058 - 7694103
Alignment:
Q  153 ataacttataaaaacaacttatagcttatataaaaatagtttgact 198  Q
    ||||||||| |||||| ||||||||||||| ||||| |||||||||    
T  7694058 ataacttatgaaaacagcttatagcttatacaaaaacagtttgact 7694103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 30581725 - 30581770
Alignment:
Q  153 ataacttataaaaacaacttatagcttatataaaaatagtttgact 198  Q
    ||||||||| |||||| |||||||||||||  ||||||||||||||    
T  30581725 ataacttattaaaacagcttatagcttatacgaaaatagtttgact 30581770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 49219156 - 49219111
Alignment:
Q  158 ttataaaaacaacttatagcttatataaaaatagtttgactatatt 203  Q
    |||| ||||||||||||||||||||| |||||| ||||||| ||||    
T  49219156 ttatgaaaacaacttatagcttatatgaaaataatttgactttatt 49219111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 19250568 - 19250525
Alignment:
Q  153 ataacttataaaaacaacttatagcttatataaaaatagtttgac 197  Q
    ||||||||||||||||||||||||| ||||| |||| ||||||||    
T  19250568 ataacttataaaaacaacttatagc-tatatcaaaacagtttgac 19250525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 198
Target Start/End: Original strand, 29007774 - 29007809
Alignment:
Q  163 aaaacaacttatagcttatataaaaatagtttgact 198  Q
    ||||||||||||||||||||| ||||||||||||||    
T  29007774 aaaacaacttatagcttatatgaaaatagtttgact 29007809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 42556683 - 42556722
Alignment:
Q  157 cttataaaaacaacttatagcttatataaaaatagtttga 196  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  42556683 cttatgaaaacaacttatagcttatataaaagtagtttga 42556722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 4078201 - 4078242
Alignment:
Q  157 cttataaaaacaacttatagcttatataaaaatagtttgact 198  Q
    ||||| |||||||||||||| |||||| ||||||||||||||    
T  4078201 cttatgaaaacaacttatagattatatgaaaatagtttgact 4078242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 15488976 - 15488931
Alignment:
Q  153 ataacttataaaaacaacttatagcttatataaaaatagtttgact 198  Q
    ||||||||| || ||||| |||| ||||||||||||||||||||||    
T  15488976 ataacttatgaagacaacgtatatcttatataaaaatagtttgact 15488931  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 198
Target Start/End: Complemental strand, 6262744 - 6262716
Alignment:
Q  170 cttatagcttatataaaaatagtttgact 198  Q
    |||||||||||||||||||||||||||||    
T  6262744 cttatagcttatataaaaatagtttgact 6262716  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 29973099 - 29973053
Alignment:
Q  157 cttataaaaacaacttatagcttatataaaaatagtttgactatatt 203  Q
    ||||| ||||||||||||||||||| | |||||||||||||| ||||    
T  29973099 cttatgaaaacaacttatagcttatgtgaaaatagtttgactttatt 29973053  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 45071218 - 45071174
Alignment:
Q  159 tataaaaacaacttatagcttatataaaaatagtttgactatatt 203  Q
    |||||||||| ||||||||||||||||||| | ||||||| ||||    
T  45071218 tataaaaacagcttatagcttatataaaaacaatttgactttatt 45071174  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 203
Target Start/End: Original strand, 31740019 - 31740057
Alignment:
Q  165 aacaacttatagcttatataaaaatagtttgactatatt 203  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  31740019 aacaacttatagcttatatgaaaatagtttgactttatt 31740057  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 35485935 - 35485889
Alignment:
Q  157 cttataaaaacaacttatagcttatataaaaatagtttgactatatt 203  Q
    ||||||||||||||||||||||||||   ||||||||||||| ||||    
T  35485935 cttataaaaacaacttatagcttataatgaaatagtttgactttatt 35485889  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 10143190 - 10143149
Alignment:
Q  157 cttataaaaacaacttatagcttatataaaaatagtttgact 198  Q
    ||||| |||| ||||||||||||||||||||| |||||||||    
T  10143190 cttatgaaaaaaacttatagcttatataaaaacagtttgact 10143149  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 37276768 - 37276723
Alignment:
Q  153 ataacttataaaaacaacttatagcttatataaaaatagtttgact 198  Q
    ||||||||| ||||||||||||| ||||||| |||| |||||||||    
T  37276768 ataacttatgaaaacaacttataacttatatgaaaacagtttgact 37276723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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