View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19401_low_8 (Length: 418)
Name: NF19401_low_8
Description: NF19401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19401_low_8 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 9 - 418
Target Start/End: Original strand, 43989314 - 43989723
Alignment:
| Q |
9 |
gagatgaagcgacaaagaaggagtggacggcgcagacatagtgaccatggacagtggcgaaagagaacgaattgaacagagaagaagaataaggaaaagg |
108 |
Q |
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| T |
43989314 |
gagaagaagcgacaaagaaggagtggacggcgcagacacagtgaccatggacagtggcgaaagagaacgaattgaacagagaagaagaataaggaaaagg |
43989413 |
T |
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| Q |
109 |
tgtgggacgacatgatcgtaagtcaaagaaggagaacaaggcaaccgaggacaatatgacaatgggctctaaaacatgaggaattcnnnnnnngctgaga |
208 |
Q |
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| T |
43989414 |
tgtgggacgacatgatcgtaagtcaaagaaggagaacaaggcaaccgaggacaatatgacaatgggctctaaaacatgaggaattctttttttgctgaga |
43989513 |
T |
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| Q |
209 |
cacgggttacttacataagaagtatcttttaagaaacatgtctccttgggtttgtttaccgggtggtcgatttacaatagnnnnnnnttgtcacctgaac |
308 |
Q |
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| T |
43989514 |
cacgggttacttacataagaagtatcttttaagaaacatgtctccttgggtttgtttaccgggtagtcgatttacaatagaaaaaaattgtcacctgaac |
43989613 |
T |
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| Q |
309 |
ctattgtttttggttcttgacagtttggatttggttttgactcgaactaataaacaacaggtaatttaccagttgagttggtttgtcaggttcaatgaat |
408 |
Q |
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| T |
43989614 |
ctattgtttttggttcttgacagtttggatttggttttgactcgaactaataaacaacaggtaatttaccagttgagttggtttgtcaggttcaatgaat |
43989713 |
T |
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| Q |
409 |
tcatcatctg |
418 |
Q |
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| T |
43989714 |
tcatcatctg |
43989723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 43918590 - 43918528
Alignment:
| Q |
89 |
gaagaagaataaggaaaaggtgtgggacgacatgatcgtaagtcaaagaaggagaacaaggca |
151 |
Q |
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| T |
43918590 |
gaagaagaataaggagaaggcatgggacgacatgatcgtaggtcgaaggaggagaagaaggca |
43918528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 377
Target Start/End: Original strand, 8831036 - 8831116
Alignment:
| Q |
297 |
tgtcacctgaacctattgtttttggttcttgacagtttggatttggttttgactcgaactaataaacaacaggtaatttac |
377 |
Q |
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| T |
8831036 |
tgtcacatgtacctattgtgtttggttcttgacaatttcaatctggttttgacccgaaccaataaacaacgggtgatttac |
8831116 |
T |
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