View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19402_high_6 (Length: 291)
Name: NF19402_high_6
Description: NF19402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19402_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 282
Target Start/End: Original strand, 52140451 - 52140714
Alignment:
| Q |
10 |
ataattctggttgaggttttggagagtagtactagtatgatatagatttcctaagctgccaaacaaatgcttgtcgttgtttctcatgagccttacaaca |
109 |
Q |
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| T |
52140451 |
ataattctggttgagattttggacagtagtactagtatgatatagatttcctaagctgccaaacaaatgcatgtcattgttgctcatgagccttacaaca |
52140550 |
T |
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| Q |
110 |
gtaccaaaagacaaacgaaacatgtttaagagagagtctatggcggctttggatgcttcagcgaatagaactttgttttgctttttgtcaaacagaagct |
209 |
Q |
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| T |
52140551 |
gtaccaaaagacaagcgaaacatgtttaagagagagtttatggcagctttggatgcttcagcgaatagaactttgttttgctttttgtcaaccagaagct |
52140650 |
T |
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| Q |
210 |
taagggtcactttggttgaagaagatgaagaagaagccatattgaaagataatgcattaacagagaggctagt |
282 |
Q |
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| T |
52140651 |
taagggttactttggt---------tgaagaagaagccatattgaaagataatgcattaacagagaggctagt |
52140714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 10 - 234
Target Start/End: Original strand, 52130847 - 52131077
Alignment:
| Q |
10 |
ataattctggttgaggttttggagagtagtactagtatgatatagatttcctaagctgccaaacaaatgcttgt---cgttgtttctc---atgagcctt |
103 |
Q |
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| T |
52130847 |
ataattctggttgaggttttggagagtactactagtgtgatgcagattgcctaagctacccgccaaatgcatgttaacgttattgctacttatgagcctt |
52130946 |
T |
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| Q |
104 |
acaacagtaccaaaagacaaacgaaacatgtttaagagagagtctatggcggctttggatgcttcagcgaatagaactttgttttgctttttgtcaaaca |
203 |
Q |
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| T |
52130947 |
aaaactgtgccaaaagacaagtgaaacatgtttaagagagagtctacggcagcttttgatgcttctgcaaacagaactttgttttgctttgtgtcaaccg |
52131046 |
T |
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| Q |
204 |
gaagcttaagggtcactttggttgaagaaga |
234 |
Q |
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| T |
52131047 |
gaagcttaagggtcattttggtggaagaaga |
52131077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 17525264 - 17525002
Alignment:
| Q |
11 |
taattctggttgaggttttggagagtagtactagtatgatatagatttcctaagctgccaaacaaatgcttgtcgttgtttctcatgagccttacaacag |
110 |
Q |
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| T |
17525264 |
taattttggttgagattttggacagtagtactagtatgatacagatttcctaagctgccaaacaaatgcatgtcgttgtagctcatgagccttacaacag |
17525165 |
T |
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| Q |
111 |
taccaaaagacaaacgaaacatgtttaagagagagtctatggcggctttggatgcttcagcgaatagaactttgttttgctttttgtcaaacagaagctt |
210 |
Q |
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| T |
17525164 |
taccaaaagacaaacgaaacatgtttaagagagagtctatggcagcttgtgatgattcggcaaacataactttgttttgctttgtgtcaaccagaagcct |
17525065 |
T |
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| Q |
211 |
aagggtcactttggttgaagaagatgaagaagaagccatattgaaagataatgcattaacagagaggctagt |
282 |
Q |
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| T |
17525064 |
aagggtcactttggttgaag---------aagaagccatattgaaagataatgcattaacagagaggctagt |
17525002 |
T |
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