View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19402_low_3 (Length: 483)
Name: NF19402_low_3
Description: NF19402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19402_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 451; Significance: 0; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 53515400 - 53514934
Alignment:
| Q |
1 |
gttgagagaaagaccggcttattagtattactgacggaaaggaaggatgaaaacatcataaagtgagtggtattctgtttgattttgatttgaaatgtgt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53515400 |
gttgagagaaagaccggcttattagtattactgacggaaaggaaggatgaaaacatcataaagtgagtggtattctgtttgattttgatttgaaatgtgt |
53515301 |
T |
|
| Q |
101 |
ataatcttttaagtcttgtaattgttgcctccggaatgcatttcagtttgacggaaaggaaggatcaatggactgaaattctgtcatctgttccaagagc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53515300 |
ataatcttttaagtcttgtaattgttgcctccggaatgcatttcagtttgacggaaaggaaggatcaatggactgaaattctgtcatctgttccaagagc |
53515201 |
T |
|
| Q |
201 |
ttccatgtatcacaattttctggtctgttttagaatatacataagatagtagaagtgaaaattaatatgagaggatgagaggacaccgattttaaaccta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53515200 |
ttccatgtatcacaattttctggtctgttttagaatatacataagatagtagaagtgaaaattaatatgagagtatgagaggacaccgattttaaaccta |
53515101 |
T |
|
| Q |
301 |
aatttatatgagaatacataagacagttgaagagaaaattaatctaacatgtatcataatatagttcttcaagtattgaatagagagctgcatataattg |
400 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53515100 |
actttatatgagaatacataagacagttgaagagaaaattaatctaacatgtatcacaatatagttcttcaagtattgaatagagagctgcatataattg |
53515001 |
T |
|
| Q |
401 |
tacctgtaatgtctgtaagcataggctaggctcatggaaaattaaattatatgacgatagaggtttt |
467 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
53515000 |
tacctgtaatgtctgtaagcataggctaggctcatggaaaattaaattatatgacaatagaggtttt |
53514934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 39 - 361
Target Start/End: Complemental strand, 53526199 - 53525878
Alignment:
| Q |
39 |
aaggaaggatgaaaacatcataaagtgagtggtattctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccggaatg |
138 |
Q |
| |
|
|||||||||||||||| || || |||||||| |||||| ||||||||||||||||||| ||| || ||||| | || |||| ||||||||| ||||||| |
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|
| T |
53526199 |
aaggaaggatgaaaacttcgtagagtgagtgatattctatttgattttgatttgaaatatgtttattctttcatgttttgtgattgttgcccccggaatt |
53526100 |
T |
|
| Q |
139 |
catttcagtttgacggaaaggaaggatcaatggactgaaattctgtcatctgttccaagagcttccatgtatcacaattttctggtctgttttagaatat |
238 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||| |||| ||||| | ||||||||||||||||||||||||||||||||| |||||||| | |
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|
| T |
53526099 |
tgtttcagtttgtcggaaaggaaggatcagtggactgaagttctttcatcggagccaagagcttccatgtatcacaattttctggtcagttttaga--tt |
53526002 |
T |
|
| Q |
239 |
acataagatagtagaagtgaaaattaatatgagaggatgagaggacaccga-ttttaaacctaaatttatatgagaatacataagacagttgaagagaaa |
337 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||| |||| | | | |||| |||||||||||| |||||||||||||||| ||||||||||||| |
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|
| T |
53526001 |
acataagatagttgaagagaaaattaatatgagaggatgtaaggaaaacaatttttgaacctaaatttagatgagaatacataagatagttgaagagaaa |
53525902 |
T |
|
| Q |
338 |
attaatctaacatgtatcataata |
361 |
Q |
| |
|
||||||||||||| ||||| |||| |
|
|
| T |
53525901 |
attaatctaacatttatcacaata |
53525878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 32 - 161
Target Start/End: Complemental strand, 53526670 - 53526541
Alignment:
| Q |
32 |
tgacggaaaggaaggatgaaaacatcataaagtgagtggtattctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctc |
131 |
Q |
| |
|
|||||||| |||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||| || ||||| | || |||| ||||||||||| |
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|
| T |
53526670 |
tgacggaacggaaggatgaaaacttcatagagtgagtggtattctgattgattttgatttgaaatgtgtttattctttcatgttttgtgattgttgcctc |
53526571 |
T |
|
| Q |
132 |
cggaatgcatttcagtttgacggaaaggaa |
161 |
Q |
| |
|
||||| ||||||||||||||||||||| |
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|
| T |
53526570 |
tggaatttgtttcagtttgacggaaaggaa |
53526541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 34 - 161
Target Start/End: Complemental strand, 53526433 - 53526306
Alignment:
| Q |
34 |
acggaaaggaaggatgaaaacatcataaagtgagtggtattctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccg |
133 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||| |||||||| | || || | ||||||||||| | |
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|
| T |
53526433 |
acggaaaggaaggatgaaaactacatagagtgagtggtattttgtttgattttgatttgaaatgtgtttaatctttcatgttttttgattgttgcctctg |
53526334 |
T |
|
| Q |
134 |
gaatgcatttcagtttgacggaaaggaa |
161 |
Q |
| |
|
|||| ||||||||||||||||||||| |
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|
| T |
53526333 |
gaatctgtttcagtttgacggaaaggaa |
53526306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 363 - 467
Target Start/End: Complemental strand, 53511337 - 53511233
Alignment:
| Q |
363 |
agttcttcaagtattgaatagagagctgcatataattgtacctgtaatgtctgtaagcataggctaggctcatggaaaattaaattatatgacgatagag |
462 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||||| |||| | ||||||| |
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|
| T |
53511337 |
agttcttcaagtattgaatagagttctgcatacaattgcacttgtaatgtctgtaagcataggctagggtcatggaaaattaaactatacaaagatagag |
53511238 |
T |
|
| Q |
463 |
gtttt |
467 |
Q |
| |
|
||||| |
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|
| T |
53511237 |
gtttt |
53511233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 32 - 165
Target Start/End: Complemental strand, 53526553 - 53526419
Alignment:
| Q |
32 |
tgacggaaaggaaggatgaaaacatcataaagtgagtggt-attctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcct |
130 |
Q |
| |
|
||||||||||||| ||| ||||| ||||| |||||||||| ||||| ||||||||||||||||||||||| |||||||| || |||| | || ||||| |
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|
| T |
53526553 |
tgacggaaaggaatgataaaaacttcatagagtgagtggttattctatttgattttgatttgaaatgtgtttaatctttcgtgttttgtgactgctgcct |
53526454 |
T |
|
| Q |
131 |
ccggaatgcatttcagtttgacggaaaggaaggat |
165 |
Q |
| |
|
| ||||| ||||||||||| ||||||||||||||| |
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|
| T |
53526453 |
ctggaattcatttcagtttaacggaaaggaaggat |
53526419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 165
Target Start/End: Complemental strand, 53526778 - 53526654
Alignment:
| Q |
41 |
ggaaggatgaaaacatcataaagtgagtggtattctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccggaatgca |
140 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||| |||||||| | | ||| |||| |||| ||| ||| | |
|
|
| T |
53526778 |
ggaaggataaaaacttcatagagtgagtggtattctgtttgattttgatttcaaatgtgtttaatctttcatgatgtgtgattgctgcccccgaaattcg |
53526679 |
T |
|
| Q |
141 |
tttcagtttgacggaaaggaaggat |
165 |
Q |
| |
|
|||||||||||||||| |||||||| |
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|
| T |
53526678 |
tttcagtttgacggaacggaaggat |
53526654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 392 - 465
Target Start/End: Complemental strand, 53549078 - 53549005
Alignment:
| Q |
392 |
atataattgtacctgtaatgtctgtaagcataggctaggctcatggaaaattaaattatatgacgatagaggtt |
465 |
Q |
| |
|
||||||||| || ||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||||||| |
|
|
| T |
53549078 |
atataattgcacttgtaaagtctgtaagcataggctaggctcatggaaaactaaattgtatgaagatagaggtt |
53549005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 53526318 - 53526240
Alignment:
| Q |
32 |
tgacggaaaggaaggatgaaaacatcataaagtgagtggt-attctgtttgattttgatttgaaatgtgtataatcttt |
109 |
Q |
| |
|
||||||||||||| | | ||||| ||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| |
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|
| T |
53526318 |
tgacggaaaggaatgctaaaaacttcatagagtgagtggttattctgtttgattttgatttgaaatgtgtttaatcttt |
53526240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 53550245 - 53550092
Alignment:
| Q |
71 |
tattctgtttgattttgatttgaaatgtgtataatcttttaagtcttgtaattgttgcctccggaatgcatttcagtttgacggaaaggaaggatcaatg |
170 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |||| ||| | || |||| | || ||| || ||||| ||||||| || |||||| |||||| || || |
|
|
| T |
53550245 |
tattctgtttgattctgatttggaatgtgtttaatttttcatgttttgtgactgctgcttctggaattggtttcagtctggcggaaaagaaggagcagtg |
53550146 |
T |
|
| Q |
171 |
gactgaaattctgtcatctgttccaagagcttccatgtatcacaattttctggt |
224 |
Q |
| |
|
|||||||||||| |||| | |||||||||| | | |||||||||||| |||| |
|
|
| T |
53550145 |
gactgaaattctttcatgggagccaagagctttcgtctatcacaattttttggt |
53550092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 392 - 463
Target Start/End: Complemental strand, 53525469 - 53525399
Alignment:
| Q |
392 |
atataattgtacctgtaatgtctgtaagcataggctaggctcatggaaaattaaattatatgacgatagagg |
463 |
Q |
| |
|
|||||||| || |||||||| |||||||||||||||||||||||| |||||||||| || || |||||||| |
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|
| T |
53525469 |
atataattccacttgtaatgt-tgtaagcataggctaggctcatgggaaattaaattgtacgaagatagagg |
53525399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 20197573 - 20197525
Alignment:
| Q |
405 |
tgtaatgtctgtaagcataggctaggctcatggaaaattaaattatatga |
454 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
20197573 |
tgtaatgt-tgtaagcataggctatgctcatggaaaattaagttatatga |
20197525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 281
Target Start/End: Original strand, 16607976 - 16608062
Alignment:
| Q |
193 |
ccaagagcttccatgtatcacaattttctggtctgttttagaatatacataagatagtagaagtgaaaattaatatgagaggatgagag |
281 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||| |||||||| |||||||||||||| |||| |||||||||||| | ||||| |||| |
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|
| T |
16607976 |
ccaagagcatccatctatcaccattttctggttggttttaga--atacataagatagtggaagagaaaattaatattaaaggataagag |
16608062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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