View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19402_low_4 (Length: 434)
Name: NF19402_low_4
Description: NF19402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19402_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 11 - 415
Target Start/End: Complemental strand, 28895178 - 28894771
Alignment:
| Q |
11 |
cacagacacacgcagaacacaacattaacacctaaacataaacactagtaataactnnnnnnntgaaagtaattgaatgtaactaatgtattagtgtcag |
110 |
Q |
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| T |
28895178 |
cacaaacacacgccgaacacaacattaacacctaaacataaacactagtaataactaaaaaattgaaagtaattgaatgtaactaatgtattagtgtcag |
28895079 |
T |
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| Q |
111 |
acaatcataacacacaagttgtgttgtgtcgtacac---acacgccttcaacagtataaaatatttgtctcctcaaagttttctaaattgcataaatgaa |
207 |
Q |
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| T |
28895078 |
acaatcataacacacaagttgtgttgtgtcgtacaccagacacgccttcaacagtataaaatatttgtctcctcaaagttttctaaattgcataaatgaa |
28894979 |
T |
|
| Q |
208 |
catattttacatttaagtatgctttcaaaatatcttcactttcaatggagcccaaaatctaaacagaactcatttttgaaggnnnnnnnctgttgcaaca |
307 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28894978 |
catattttatatttgagtatgctttcaaaatatcttcactttcaatggagcccaaaatctaaacagaactcatttttgaaggaaaaaaactgttgcaaca |
28894879 |
T |
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| Q |
308 |
ataagaaattattataccgagaaagagttgtcattggcttctttaccgatagcaaagctcaaaagtgagctccttctcttcaaattcaaaccattgatgc |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||| | |
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| T |
28894878 |
ataagaaattattataccgagaaagagttgtcattggcttctttaccgaaagcaaagctcaaaagtgagttccttctcttcaaattcaaactattgatac |
28894779 |
T |
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| Q |
408 |
tgtgccgt |
415 |
Q |
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|||||||| |
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| T |
28894778 |
tgtgccgt |
28894771 |
T |
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