View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19402_low_5 (Length: 302)
Name: NF19402_low_5
Description: NF19402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19402_low_5 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 110 - 302
Target Start/End: Complemental strand, 8597775 - 8597577
Alignment:
| Q |
110 |
attaaattattctaagattacaagaatnnnnnnngtaaattaagtttaaaatctcatccttccctttctggactaaaaatatttaattaaannnnnnnat |
209 |
Q |
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| T |
8597775 |
attaaattattgtaagattacaagaataaaaaaagtaaattaagtttaaaatctcatccttccctttctggactaaaaatatttaattaaaaaaatttat |
8597676 |
T |
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| Q |
210 |
c-ctctcttc----ctttcccctccctttttgatcccttgttaaattctcagccctgtttgtacc-ataaaaccctaagcaaaataagaaaataatggt |
302 |
Q |
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| T |
8597675 |
caatctcatctcttctttcccctcccttttcgatccctttttaaattctcagccctgtttgtaccaaaaaaaccctaagcaaaataagaaaataatggt |
8597577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 8597950 - 8597855
Alignment:
| Q |
1 |
atgataaaaaagagtcttctctttgttagaaccaaaggataaagaggtaaaattaacccgaccctcaaattttttgatatatattttctcttccct |
96 |
Q |
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| T |
8597950 |
atgataaaaaagagtcttctctttgttagaaccaaaggacaaagaggtaaaattaacccgaccctcaaattttttgatatatattttctcttccct |
8597855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 8576983 - 8577075
Alignment:
| Q |
1 |
atgataaaaaagagtcttctctttgttagaaccaaaggataaagaggtaaaattaacccgaccctcaaattttttgatatatattttctcttc |
93 |
Q |
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| T |
8576983 |
atgataaaaaagagtcttctctttgttagaatcaaaggacaaagaggtaaaattaacccgaccctcaaattttttgatatatattttctcttc |
8577075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 144 - 302
Target Start/End: Original strand, 8577189 - 8577354
Alignment:
| Q |
144 |
gtaaattaagtttaaaatctcatccttccctttctggactaaa-aatattt--aattaaannnnnnnatcctctcttcctttcccctccctttttgatcc |
240 |
Q |
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| T |
8577189 |
gtaaattaagtttaaaatctcatccttcattttgtggactaaacaatatttttaattaaaaaattt-atcctctcttcctttcccctcccttttcgatcc |
8577287 |
T |
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| Q |
241 |
cttgttaaattctcagccctgtttgtac-----cataaaaccctaagcaaaataagaaaataatggt |
302 |
Q |
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| T |
8577288 |
cttgttaatttctcagccctgtttgtactttaccaaaaaaccctaagcaaaataagaaaataatggt |
8577354 |
T |
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