View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19403_high_12 (Length: 518)

Name: NF19403_high_12
Description: NF19403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19403_high_12
NF19403_high_12
[»] chr4 (2 HSPs)
chr4 (148-509)||(6133605-6133966)
chr4 (16-73)||(6133490-6133548)
[»] chr7 (1 HSPs)
chr7 (166-509)||(20599803-20600146)
[»] chr1 (2 HSPs)
chr1 (379-508)||(47944733-47944862)
chr1 (210-386)||(47944888-47945064)


Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 148 - 509
Target Start/End: Original strand, 6133605 - 6133966
Alignment:
Q  148 tatattgcttctctttgactcttaccttcatgaactgatcatcatattagaatggaatcaacacctgattttgtgaaaagggtgcttagagaagcgcttg 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6133605 tatattgcttctctttgactcttaccttcatgaactgatcatcatattagaatggaatcaacacctgattttgtgaaaagggtgcttagagaagcgcttg 6133704  T
Q  248 gtgatgacgttagcgatttcaaactactggtatttgcagttcatgcttttattcttgaatcagggtttattcgtgtggatcgcgtttcgggtgtgaagat 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6133705 gtgatgacgttagcgatttcaaactactggtatttgcagttcatgcttttattcttgaatcagggtttattcgtgtggatcgcgtttcgggtgtgaagat 6133804  T
Q  348 tagttcctctcatcttattgatgacatgtcttcttcttcagtgatatgtttgaggtatactcttcctgagattcttactaatggttcacctcattcattg 447  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6133805 tagttcctctcatcttatagatgacatgtcttcttcttcaatgatatgtttgaggtatactcttcctgagattcttactaatggttcacctcattcattg 6133904  T
Q  448 aatttgaaaattcagacattagggcattttgtgaatgtttatggttcattgtatgatgatgt 509  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6133905 aatttgaaaattcagacattagggcattttgtgaacgtttatggttcattgtatgatgatgt 6133966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 6133490 - 6133548
Alignment:
Q  16 caaaaacgctagtctttga-ctcttacaaacaccaactcacactcagaatcaacaccat 73  Q
    ||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  6133490 caaaaacactagtctttaaactcttacaaacaccaactcacactcagaatcaacaccat 6133548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 166 - 509
Target Start/End: Original strand, 20599803 - 20600146
Alignment:
Q  166 ctcttaccttcatgaactgatcatcatattagaatggaatcaacacctgattttgtgaaaagggtgcttagagaagcgcttggtgatgacgttagcgatt 265  Q
    |||||||| |||| ||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| || |||||||||||||    
T  20599803 ctcttaccatcatcaaccgatcattatattagaatggaatcaacacctaattttgtgaaaagggtgcttagagaagcacttggcgacgacgttagcgatt 20599902  T
Q  266 tcaaactactggtatttgcagttcatgcttttattcttgaatcagggtttattcgtgtggatcgcgtttcgggtgtgaagattagttcctctcatcttat 365  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||| ||| ||   || |||  ||||||||||||    
T  20599903 tcaaactactggtatttgctgttcatgcttttattcttgaatcagggtttgttcgtgtggatcacgtttcaggtatggctatcagtatctctcatcttat 20600002  T
Q  366 tgatgacatgtcttcttcttcagtgatatgtttgaggtatactcttcctgagattcttactaatggttcacctcattcattgaatttgaaaattcagaca 465  Q
    |||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  20600003 tgatgacatgtcttcttcttcaatgatatccttgaggtatactcttcctgagattcttactaatggttcatctcattctttgaatttgaaaattcagaca 20600102  T
Q  466 ttagggcattttgtgaatgtttatggttcattgtatgatgatgt 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  20600103 ttagggcattttgtgaatgtttatggttcattgtatgatgatgt 20600146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 379 - 508
Target Start/End: Complemental strand, 47944862 - 47944733
Alignment:
Q  379 tcttcttcagtgatatgtttgaggtatactcttcctgagattcttactaatggttcacctcattcattgaatttgaaaattcagacattagggcattttg 478  Q
    ||||| ||| |||||| |||||||||||||||||||||||||||||| ||||||||| ||||| |  |||  |||||||||||||| |||||| ||||||    
T  47944862 tcttcatcaatgatatctttgaggtatactcttcctgagattcttaccaatggttcatctcatgctgtgatattgaaaattcagactttagggaattttg 47944763  T
Q  479 tgaatgtttatggttcattgtatgatgatg 508  Q
    ||||||| ||||||||||||| ||||||||    
T  47944762 tgaatgtctatggttcattgtgtgatgatg 47944733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 210 - 386
Target Start/End: Complemental strand, 47945064 - 47944888
Alignment:
Q  210 acctgattttgtgaaaagggtgcttagagaagcgcttggtgatgacgttagcgatttcaaactactggtatttgcagttcatgcttttattcttgaatca 309  Q
    ||||||||| ||||| |||||  |||  ||||||||||||||||| ||||| ||||| || ||  |||| ||||| ||||||||| |||||||||||||     
T  47945064 acctgatttcgtgaagagggttattaaggaagcgcttggtgatgatgttagtgatttgaagctgttggtgtttgcggttcatgctgttattcttgaatct 47944965  T
Q  310 gggtttattcgtgtggatcgcgtttcgggtgtgaagattagttcctctcatcttattgatgacatgtcttcttcttc 386  Q
    |||||| ||||||||||    ||||||||| ||  |||||||| |||| ||||| ||||||| ||||||||||||||    
T  47944964 gggtttgttcgtgtggacgaggtttcgggtatggcgattagttgctctaatcttgttgatgatatgtcttcttcttc 47944888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University