View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19403_high_14 (Length: 509)
Name: NF19403_high_14
Description: NF19403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19403_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 20 - 486
Target Start/End: Complemental strand, 2154012 - 2153547
Alignment:
| Q |
20 |
agatgttcatggaaaaattaaacaaaagaattagtaacatattgttgatgtactattgtcgttgtggaccatattgtgtaagtacatttgtatgtgctct |
119 |
Q |
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| T |
2154012 |
agatgttcatggaaaaattaaacaaaagaattagtaacatattgttgatgtactattgtcgttgtggaccatattgtgtaagtacatttgtatgtgctct |
2153913 |
T |
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| Q |
120 |
tagagtgtgagatgtgtactttggtgagttgtcggaaacaaactcgccaaaatctcgtaattattacaagattccttttcatagtgnnnnnnngaacaag |
219 |
Q |
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| T |
2153912 |
tagagtgtgagacgtgtactttgatgagttgtcggaaacaaactcgccaaaatctcgtaattattacaagattccttttcatagtgtttttt-gaacaag |
2153814 |
T |
|
| Q |
220 |
tttagtgaactgagacttataatgtttagtctttttgtaaatctcctatttatgaagcattgactttgaagatttgattgaaatatttgttcttatattg |
319 |
Q |
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| T |
2153813 |
ttttgtgaactgagccttataatgtttagtctttttgtaaatctcctatttatgaagcattgactttgaagatttgattgaaatatttgttcttatattg |
2153714 |
T |
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| Q |
320 |
ttttattaaactaaaccttgcacagagttggacttgaacttccaacaattgaagttagatttgaggatataaatgtggaagcacaagtttatgttggaag |
419 |
Q |
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| T |
2153713 |
ttttattaaactaaaccttgcacagagttggacttgaacttccaacaattgaagttagatttgaggatataaatgtggaagcacaagtttatgttggaag |
2153614 |
T |
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| Q |
420 |
gagagcattgcctacattatttaatttctttgtgaatgtgatagaggtaattcaatattgcaaataa |
486 |
Q |
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| T |
2153613 |
gagagcattgcctacattatttaacttctttgtgaatgtgatagaggtaattcaatattgcaaataa |
2153547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 341 - 437
Target Start/End: Complemental strand, 2166100 - 2166004
Alignment:
| Q |
341 |
acagagttggacttgaacttccaacaattgaagttagatttgaggatataaatgtggaagcacaagtttatgttggaaggagagcattgcctacatt |
437 |
Q |
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|||||||||||||||| |||||| | ||||||| ||||||||| |||||||||| ||||||||||||||||||||| | ||||| |||||| |||| |
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| T |
2166100 |
acagagttggacttgatattccaatagttgaagtgagatttgagcatataaatgttgaagcacaagtttatgttggaggaagagctttgccttcatt |
2166004 |
T |
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