View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19403_high_16 (Length: 497)
Name: NF19403_high_16
Description: NF19403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19403_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 7 - 453
Target Start/End: Complemental strand, 52482553 - 52482106
Alignment:
| Q |
7 |
atatatacagaaaattccacatcaatggaagacaagcgggcaacaa-ctatgcctctaaacgtttttagatagtaaaaccaatcctcgtaaaattactca |
105 |
Q |
| |
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|||||||||||||||| ||| | |||||||||||||||||| |||| ||| ||| |||||||||||||||||| ||||| ||||||||||||||||| || |
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| T |
52482553 |
atatatacagaaaatttcacgttaatggaagacaagcgggctacaaactacgccgctaaacgtttttagatagcaaaactaatcctcgtaaaattacaca |
52482454 |
T |
|
| Q |
106 |
taagtccaattctaaattctaactgccttaaaagtagtttcggtaagttttccttcgcttagctgatttccattgcctaattaaatgtgaaacaccctcc |
205 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52482453 |
taagtccaattctaaattctaaccgccttaaaagtagtttcggtaagttttccttcgcttagctgatttccattgcctaattaaatgtgaaacaccctcc |
52482354 |
T |
|
| Q |
206 |
ttcaccgtagccttccttccttccttaaaattccagagttcaagtattgagtatcttccactaggattgtactcatttaactcctttagagctgtaacta |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52482353 |
ttcaccgtagccttccttccttccttaaaattccagagttcaagtattgagtatcttccactaggattgtactcatttaactcctttagagctgtaacta |
52482254 |
T |
|
| Q |
306 |
ctgcatcatgcaccttatccccgaattcatcctttaaacttttcagtttttcatcttctccgtctaaaatttcctgtgccatatattaacatatattaga |
405 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52482253 |
ctgcatcatgcaccttatccccgaattcatcctttaaacttttcagtttttcatcttctccgtctaaaatttcctgtgccatatattaacatatattaga |
52482154 |
T |
|
| Q |
406 |
tcatggtacatgctgttcatatcatggaaagaaacatgccaaataatt |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52482153 |
tcatggtacatgctgttcatatcatggaaagaaacatgccaaataatt |
52482106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 183 - 480
Target Start/End: Original strand, 16407261 - 16407559
Alignment:
| Q |
183 |
taattaaatgtgaaacaccctccttcaccgtagccttccttccttccttaaaattccagagttcaagtattgagtatcttccactaggattgtactcatt |
282 |
Q |
| |
|
|||||||||| |||||||| ||||||| || ||||||||||||||||||||||||||||||||| |||||| | || |||||||||||||||||||| |
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| T |
16407261 |
taattaaatgcgaaacaccttccttcaacgaagccttccttccttccttaaaattccagagttccggtattggattcctgccactaggattgtactcatt |
16407360 |
T |
|
| Q |
283 |
taactcctttagagctgtaactactgcatcatgcaccttatccccgaattcatcctttaaacttttcagtttttcatcttctccgtctaaaatttcctgt |
382 |
Q |
| |
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||||||||| ||||| ||| ||||||||||||| ||| |||||| | |||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
16407361 |
taactccttcagagccgtagatactgcatcatgcgcctcatccccaacctcatccttcaaacttttcagcttttcatcttctccgtctaaaatttcctgc |
16407460 |
T |
|
| Q |
383 |
gccatatat-taacatatattagatcatggtacatgctgttcatatcatggaaagaaacatgccaaataattgctacagatgtcaaattttctgtatat |
480 |
Q |
| |
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| |||||| |||||||||||||||||| || || || ||| | || | |||||| |||||| ||||||||||| | |||| ||| |||||||||||| |
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| T |
16407461 |
gtgatatatctaacatatattagatcatcgtccacgcagtttacataagggaaaggaacatgacaaataattgccaacgatggcaatttttctgtatat |
16407559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 3e-86; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 149 - 457
Target Start/End: Complemental strand, 41472172 - 41471863
Alignment:
| Q |
149 |
taagttttccttcgcttagctgatttccattgcctaattaaatgtgaaacaccctccttcaccgtagccttccttccttccttaaaattccagagttcaa |
248 |
Q |
| |
|
||||||||| ||| |||| | || ||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| |||||||||||||||| |
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| T |
41472172 |
taagttttctttcccttatttaatatccattgcctaattaaatgggaaacaccctccttcaacgtggccttccttccttccctaaaattccagagttccg |
41472073 |
T |
|
| Q |
249 |
gtattgagtatcttccactaggattgtactcatttaactcctttagagctgtaactactgcatcatgcaccttatccccgaattcatcctttaaactttt |
348 |
Q |
| |
|
|||||| ||| || |||||||| ||| |||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||| |||||||| |||||||| |
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| T |
41472072 |
gtattgggtacctaccactagggttgcactcgtttaactccttcagagctgtagctactgcatcatgcacctcatccccgaactcatccttcaaactttt |
41471973 |
T |
|
| Q |
349 |
cagtttttcatcttctccgtctaaaatttcctgtgccatatat-taacatatattagatcatggtacatgctgttcatatcatggaaagaaacatgccaa |
447 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||| |
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| T |
41471972 |
tagcttttcatcttctccgtctaaaatttcctgcgtggtatatgtaacatatattagatcatggcccatgcagttcatatcagggaaacaaacatgccaa |
41471873 |
T |
|
| Q |
448 |
ataattgcta |
457 |
Q |
| |
|
|||| ||||| |
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|
| T |
41471872 |
ataagtgcta |
41471863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 149 - 457
Target Start/End: Complemental strand, 41479173 - 41478864
Alignment:
| Q |
149 |
taagttttccttcgcttagctgatttccattgcctaattaaatgtgaaacaccctccttcaccgtagccttccttccttccttaaaattccagagttcaa |
248 |
Q |
| |
|
||||||||| ||| |||| | |||||||||||||||||||||| |||||||||||||||| || ||||||||||||||| |||||||||||||||| |
|
|
| T |
41479173 |
taagttttctttcccttatttaatttccattgcctaattaaatgggaaacaccctccttcaatgtggccttccttccttccctaaaattccagagttccg |
41479074 |
T |
|
| Q |
249 |
gtattgagtatcttccactaggattgtactcatttaactcctttagagctgtaactactgcatcatgcaccttatccccgaattcatcctttaaactttt |
348 |
Q |
| |
|
|||||| ||| || |||||||| ||| |||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||| |||||||| |||||||| |
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| T |
41479073 |
gtattgggtacctaccactagggttgcactcgtttaactccttcagagctgtagctactgcatcatgcacctcatccccgaactcatccttcaaactttt |
41478974 |
T |
|
| Q |
349 |
cagtttttcatcttctccgtctaaaatttcctgtgccatatat-taacatatattagatcatggtacatgctgttcatatcatggaaagaaacatgccaa |
447 |
Q |
| |
|
|| |||||||||||||||||| |||||||||| | ||||| ||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||| |
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|
| T |
41478973 |
tagcttttcatcttctccgtctgaaatttcctgcgtggtatatgtaacatatattagatcatggtccatgcagttcatatcagggaaacaaacatgccaa |
41478874 |
T |
|
| Q |
448 |
ataattgcta |
457 |
Q |
| |
|
|||| ||||| |
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|
| T |
41478873 |
ataagtgcta |
41478864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 169 - 457
Target Start/End: Complemental strand, 40753407 - 40753119
Alignment:
| Q |
169 |
tgatttccattgcctaattaaatgtgaaacaccctccttcaccgtagccttccttccttccttaaaattccagagttcaagtattgagtatcttccacta |
268 |
Q |
| |
|
|||||||||| | ||| |||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||| ||| || ||| || |||||| |
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|
| T |
40753407 |
tgatttccatatcttaactaaatgggaaactccctccttcaacgaagccttccttccttccttaaaattccagagttccggtactgggtacctaccacta |
40753308 |
T |
|
| Q |
269 |
ggattgtactcatttaactcctttagagctgtaactactgcatcatgcaccttatccccgaattcatcctttaaacttttcagtttttcatcttctccgt |
368 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||||| | |
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|
| T |
40753307 |
gggttgtactcatttaactccttcagagctgtagctactgcatcatgcaccttatcccc-aactcatccttcaaacttttcagcttttcatcttctccat |
40753209 |
T |
|
| Q |
369 |
ctaaaatttcctgtgccatatat-taacatatattagatcatggtacatgctgttcatatcatggaaagaaacatgccaaataattgcta |
457 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||| |||| ||||||| || ||||| ||| ||||||||||| ||||| |
|
|
| T |
40753208 |
ctaaaatttcctgtgtgatatatctaacatatattagatcatggtttatgcagttcatagcagggaaacaaatatgccaaataagtgcta |
40753119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 174 - 457
Target Start/End: Complemental strand, 41486273 - 41485989
Alignment:
| Q |
174 |
tccattgcctaattaaatgtgaaacaccctccttcaccgtagccttccttccttccttaaaattccagagttcaagtattgagtatcttccactaggatt |
273 |
Q |
| |
|
|||||||| |||||||||| |||||||| ||||||| | |||||||||||||||| |||||||||||||||| |||||| |||||| |||||||| || |
|
|
| T |
41486273 |
tccattgcttaattaaatgggaaacaccttccttcaaggaagccttccttccttccctaaaattccagagttctggtattgggtatctaccactagggtt |
41486174 |
T |
|
| Q |
274 |
gtactcatttaactcctttagagctgtaactactgcatcatgcaccttatccccgaattcatcctttaaacttttcagtttttcatcttctccgtctaaa |
373 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||| |||||| || |||||||| ||||||||||| |||| ||||||||| |||||| |
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|
| T |
41486173 |
gtactcatttaactccttcagagctgtagctactgcatcatgcacctcatccccaaactcatccttcaaacttttcagctttttatcttctccatctaaa |
41486074 |
T |
|
| Q |
374 |
atttcctgtgccatatat-taacatatattagatcatggtacatgctgttcatatcatggaaagaaacatgccaaataattgcta |
457 |
Q |
| |
|
|||||||||| |||||| | ||||||||||||||||||| ||| | ||||| || ||||| | ||||||||| ||| ||||| |
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|
| T |
41486073 |
atttcctgtgtgatatatcttacatatattagatcatggtccataaagctcatagcagggaaacagacatgccaagtaagtgcta |
41485989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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