View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19403_high_20 (Length: 413)
Name: NF19403_high_20
Description: NF19403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19403_high_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 394
Target Start/End: Complemental strand, 45407704 - 45407341
Alignment:
| Q |
14 |
agattaagtgtagtaattacggagaggttgctgtatggagtcataacattaacacttataataagacattcatgttacgattactgcaatgaacatggcc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45407704 |
agattaagtgtagtaattacggagaggttgctgtatggagtcataacattaacacttataataagacattcatgttacgattactgcaatgaacatggcc |
45407605 |
T |
|
| Q |
114 |
ggctttgatctaattaggaaaaatatgccggcatatcttcttgatctatatatggttttgcttcaatcct-ccttcacaatgcttcttgcgtgctggcac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| || ||||||||||||||||| |
|
|
| T |
45407604 |
ggctttgatctaattaggaaaaatatgccggcatatcttcttgatctatatatggttttgcttcaatcctactttcataaagcttcttgcgtgctggc-- |
45407507 |
T |
|
| Q |
213 |
atgtatactttgataatctagagttcggttaaaagataaataaaaagttggtagaaaatcatttccattaaagattcatctctaaatattttaaattaat |
312 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
45407506 |
---------ttgataatttagagttcggttaaaagataaataaaaagttggtagaaaatcatttccattaaagattcatctcaaaat-------attaat |
45407423 |
T |
|
| Q |
313 |
cgtaacttattaaccatttaagtttaattgttagagaagtcatacatttatcgaacacgaagtcatggattttgatgcattg |
394 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
45407422 |
cgtaacttattaaccacttaagtttaattgttagagaagtcatacatttatcaaacacgaagtcataaattttgatgcattg |
45407341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 10922747 - 10922601
Alignment:
| Q |
15 |
gattaagtgtagtaattacggagaggttgctgtatggagtcataacattaacac-----------ttataataagacattcatgttacgattactgcaat |
103 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
10922747 |
gattaagtgaagtaattacggagaggttgctgtatggagtcataacattaacacatagaaaacacttataataagacattcatgttacgatcactgcaat |
10922648 |
T |
|
| Q |
104 |
gaacatggccggctttgatctaattaggaaaaatatgccggcatatct |
151 |
Q |
| |
|
|||| |||||||||||||| ||| |||||||| ||||| |||||||| |
|
|
| T |
10922647 |
gaacgtggccggctttgatttaacgaggaaaaa-atgcccgcatatct |
10922601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University