View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19403_high_28 (Length: 307)
Name: NF19403_high_28
Description: NF19403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19403_high_28 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 290
Target Start/End: Complemental strand, 43636228 - 43635944
Alignment:
| Q |
7 |
tagattatactaaggtgaaagatattgtaactcataaaaaactagacatgttactgnnnnnnnn-aatggctttatgttctgtgattcaacccttcaata |
105 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43636228 |
tagattagacaaaggtgaaagatattgtaactcataaaaaactagacatgttactgtttttttttaatggctttatgttctgtgattcaacccttcaata |
43636129 |
T |
|
| Q |
106 |
gacatgannnnnnnnnnnnnggggtgagttttagttagatatattttcttatgcaaaaattgaatttttctatatataattcaaaaatagtggctaatga |
205 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43636128 |
gacatgatttttttctttttggggtgagttttagttagatatattttcttatgcaaaaattgaatttttctatatataattcaaaaatagtggcttatga |
43636029 |
T |
|
| Q |
206 |
atttttgggttgttttcagaaaaggcctcatcttcaaagttgttaaacttatgtgttcttcattgtatcaaacttctgtaatagg |
290 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43636028 |
atttttgggttgttttcagaaaaggtctcatcttcaaagttgttaaacttatgtgttcttcattgtatcaaacttctgtaatagg |
43635944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University