View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19403_high_47 (Length: 217)
Name: NF19403_high_47
Description: NF19403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19403_high_47 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 153829 - 153646
Alignment:
| Q |
17 |
agacaaaatctaacatgtcaagacatataaatctcacttatataaggaaacatgagtagtggaagttctctagtgtggtagctccaactctggaatgttt |
116 |
Q |
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| T |
153829 |
agacaaaatctaacatgtcaagacatataaatctcacttatataaggaaacatgagtagtggaagttctctagtgtggtagctccaactctggaatgttt |
153730 |
T |
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| Q |
117 |
gtattcgaaaaataagtaacaaaacaaatagaagcctttgagaactgcaaggatgcaacgaaagtaaatatagaaacattttat |
200 |
Q |
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| T |
153729 |
gtattcgaaaaataagtaacaaaacaaatagaagcctttgaaaactgcaaggatgcaacgaaagtaaatatagaaacattttat |
153646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 149006 - 148900
Alignment:
| Q |
17 |
agacaaaatctaacatgtcaagacatataaatctcacttatataaggaaacatgagtagtggaagttctctagtgtggtagctccaactctggaatgttt |
116 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
149006 |
agacaaaatctaacatctcaagacatataaatctcacttatataatgaaacatgagtggtggaagttctctagtgtggtagctccaactctagaatgttt |
148907 |
T |
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| Q |
117 |
gtattcg |
123 |
Q |
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||||||| |
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| T |
148906 |
gtattcg |
148900 |
T |
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